BAC Information

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BAC

Clone NameMSMg01-192N22
Chromosome3 (Build37)
Map Location 40,859,298 - 40,859,703
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2
Downstream genePgrmc2, EG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192N22.T7 (MSMg01no192_n22.b1)MSMg01-192N22.TJ (MSMg01no192_n22.g1)
ACCAG382399AG382400
length1,2191,216
length of high quality
(start - end)
421 (31 - 451)380 (71 - 450)
definitionCHROMAT_FILE: MSMg01no192_n22.b1 PHD_FILE: MSMg01no192_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:10:51 2005CHROMAT_FILE: MSMg01no192_n22.g1 PHD_FILE: MSMg01no192_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:10:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGCCGCACTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAAT
TCTCATTTCCCTTTCAGAGGTATTAAAATGGCCCAGGCATGCCTCACATT
AAGTGGTGCAATCCGTTTCTCCACCCTTTGAGTCTGCCTGGCCCTGGGAC
CTGCTCTGACGTAACAAAAAGCCCAGGAGTCAATCTTCTGTCCTTGGCCT
CTTGAGGGACAGCAAAGCTTCTACTCCTGGAGAGCATCTCCCATAGTGCG
AAAGGGACAGAGAAGCCCACCCTTTCCATGGCACTGGACACATGACAGTA
TCCAGCCTGGGCAATCCCGGGTGACCCCAAGCAGAAAAACCACTGTACCC
ACATAAACAAGGAACAAATGAATGCTGTGCCTTTTTTTTTCTTCTTAACT
TTTAGGAAGATTTACTATGCAAAACTACTAAGCAATACTCCTGATGTTTG
ATTTTTTACCCCCCCGCCAGAAAGCAAGTTTCACTTAAAATAGGTCCATT
CCACAGTAGCCATTCAAACCTCACTAGACACCACGCTAAATCTGCAAGGG
CTTTTATAAACTCACACCACTGAAGCTACTCTGCAGTCACCCTCCTTCTG
AGCACTGGGAGGGATGAACTCTCACTCACTCAGTGCTCACTGTCATCCTC
CACTGAGTTGTGTCCCCAGCCATGCAGCCTATGCAGTAGTCACATCCTGC
TGATGTGACAAGATTCCCTGTAAAAGCAACTTAAGAGAGGAAGGTTTTAT
TCCAGCTCACGATTCGGGGGTACAGTCCATCATGACAAGGAAATCAAGGC
GGTAGGAGCTTGAAGCAGCTGGATATATGGATATAGTGTGACCTATCCAC
AGTTAAGAGCAGGGAGCACGGGGCTGAGAGGCGTCTCCTGGTTTTAAAAG
ACTGGTTGTTCTTCCAAAGACCTGGGGTCCTTTTCCCCGAACGAAATGTT
AGCTTCCAACCCCTCGATAATCCCTTTCCGGGGAACTTGATTGTCCCTTC
CGATCTCTCTCCGGCCAAGGTAATTCCCTTTTTTTTCCCGATTTTTTGAT
TGGGGGGTATTTTTTACTCCTTCTCCCCTCCCAATATATTTTTTTTTTTT
TTTATAAAACATTCTGTGTTATGTTTTTACCCGGCTCCCCTCGGGGGTTC
TCCCCTTCTCTTGTGTGNCTTATAATTCCTCGTCCCGTACAATATGTATT
TTCTCTATAAACATAGGTC
NNNAAGTGAGGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCACAAGTTGTCCTCTGATTTCCACATGTG
TGCCCGCCCCACACACACAAAATTAAAAACATTTCATTTTTAAATTTCTA
TGCTGGGCAGTGGTGGCGCACACCTTTAATCTCAGCACTTGGGAAGCAGA
GGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTC
CAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAAAAACCAAA
AAAATAAAAAATAAGAAACCTATATGATGATAGGGCTCTAGGATGGCTGG
GGATACACAGAAAAACCCTGTCTCAAAGCCAAAAAAAGAAAAATAGAACA
AAACAGAACCAACATAACATGTATTCGCTTGTGGTAGGCAGTAGTTTTCT
TTTTTCTACCCCCCCCATTATTTTAAATTTTATTCATTAATAAAGAAATT
TTATATGTGTTTTCCTGCATATATGTCTGCATCATGTATGTGCTGGTACC
CAGGAGGCCAAAAGAATGTGCTAGATCTAAGACTTGAGTTATAGATAGTT
GTGTCTCACCATGTGTGTTCTGGAAATTGGACTTGGGTCCTTTAGAAGAC
CAACCAGGGTGTTAGAGAGGTGGCTCAGCAGGTAAGAGCACTAACTGCTC
TTCCAGAGGTCTTGAGTTCAAATCCCAACAACTATATGGTGACTCACAAA
CATCTGTAATAAAATCTGATGCCCTCTTCTGGGGTGTTGAAGACAGCTAT
AGTGTATTACATATAATAATAAATAAATCTTTGGGCAAAAGTGAGCAGGG
CGGGAGAAAGCAGAGGTCCTGAGGTCAATTCCCCGCACCTAAATGATGGC
TCACAACCATCTATTAAGCTACGGGGGACTCATTTTCCTTAAAAAAAAAA
ATTCCCTCTTAAAAAAAAAAAGAAAAAAAAAAAACCCCGGGGTCGGAACA
AATGATTGGGTTCCCCCCAAATGGATGGGTGGGGTGCGGGCGTCCACCAA
TCACTCCTCCCCCTGTTAATATCTTTCTTTTTTCCCAATTCTTCTCCCCT
ATCATCCCCTTTCACCTTCCTCTTTCTCCTCATTCTCACTCCTTCTTCTA
TCTTTATTTAATCCATTTTATCACCTTCTAATTTCCTTCTCCCCTTACTA
CACTCATCTTACCACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_n22.b1 MSMg01no192_n22.b1 CHROMAT_FILE:
MSMg01no192_n22.b1 PHD_FILE: MSMg01no192_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:10:51 2005
         (421 letters)



>mm_chr3_40859082_40859903
          Length = 822

 Score =  675 bits (349), Expect = 0.0
 Identities = 392/407 (96%), Gaps = 3/407 (0%)
 Strand = Plus / Minus

                                                                       
Query: 17  gaattctcatttccctttcagaggtattaaaatggcccaggcatgcctcacattaagtgg 76
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 622 gaattctcatttccctttcagagggattaaaatggcccaggcatgcctcacattaagtgg 563

                                                                       
Query: 77  tgcaatccgtttctccaccctttgagtctgcctggccctgggacctgctctgacgtaaca 136
           || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 562 tggaatccgtttctccaccctttgagtctgcctggccctgggacctgctctgccgtaaca 503

                                                                       
Query: 137 aaaagcccaggagtcaatcttctgtccttggcctcttgagggacagcaaagcttctactc 196
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 502 aaaagcccaggagtcaatcttctgtccttggcctcttgagggacagcaaagcgtctactc 443

                                                                       
Query: 197 ctggagagcatctcccatagtgcgaaagggacagagaagcccaccctttccatggcactg 256
           |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 442 ctggagagcatctcccatagtgtgaaagggacagagaagcccactctttccatggcactg 383

                                                                       
Query: 257 gacacatgacagtatccagcctgggcaatcccgggtgaccccaagcagaaaaaccactgt 316
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gacacatgacagtgtccagcctgggcaatcccgggtgaccccaagcagaaaaaccactgt 323

                                                                       
Query: 317 acccacataaacaaggaacaaatgaatgctgtgccttttttttt--cttcttaactttta 374
           | ||| ||||||||||||||||||||||||||||||||||||||  |||| |||||||| 
Sbjct: 322 a-ccaaataaacaaggaacaaatgaatgctgtgccttttttttttccttcctaacttttg 264

                                                          
Query: 375 ggaagatttactatgcaaaactactaagcaatactcctgatgtttga 421
           |||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 263 ggaacatttactatacaaaactactaagcaatactcctgatgtttga 217


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 822
Length adjustment: 9
Effective length of query: 412
Effective length of database: 813
Effective search space:   334956
Effective search space used:   334956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)