BAC Information

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BAC

Clone NameMSMg01-193C01
Chromosome3 (Build37)
Map Location 80,305,751 - 80,306,148
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik, EG626797
Downstream geneGria2, Glrb, EG626841, Pdgfc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-193C01.T7 (MSMg01no193_c01.b1)MSMg01-193C01.TJ (MSMg01no193_c01.g1)
ACCAG382558AG382559
length1,2191,220
length of high quality
(start - end)
414 (29 - 442)377 (71 - 447)
definitionCHROMAT_FILE: MSMg01no193_c01.b1 PHD_FILE: MSMg01no193_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:11:22 2005CHROMAT_FILE: MSMg01no193_c01.g1 PHD_FILE: MSMg01no193_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:11:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCAGCACTGGGCGCTAAGACTCCTAAGGGAGAGGATCCGCGGAATTCT
ATTCTATTATAAACATGATGGTGCTAATCCTAGCAATTAGAAAGCAGAGG
CAGGCAGATCTCTGTGAGTGGCAGCTTACCCTGATTTTCATAGTGAGTTC
CAAGAAAGCTCAATAATGAGACTTAAGCTTAGTTGCTATTTCAAGTGCTT
TCTGGAGAAGAGGTCAAAATCATGTTTAATTAAATCATACTTTATGTGAA
GATATGAGAATGTCCAGAGTAAGCTGACTTATTTAATGTTATCTAATGCC
TTCAGGGTTTCATTATGTTACTTCGGAACATAAGTTTAACTCATGTTCAT
CAATTGATATTGAGATCTTTTTTTTTTAATTGGCTGTGTTCTTTTCCTAT
TACCCATTTTTGTGGCCTTCCACAGAACTAATTTCACAGTTATAATTTTT
TTCTCCCCCCCCGCTTTGCAGCACGCCCCACTGAAAAAAAGTCTCTCTCT
CTCTCTCTCTCTCCCTCTCTCCCTCCCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCT
CTCTCTCTCTCTTTCCCTCTCTCTCTTCCTCTCTCTCTCTCTCTTCCTCT
CTCTCTCCCCCCTCCTCTTCTTTGTCGTGTGTCTGTTCTTTTCCTCTGCC
TGCCGTTCTTTCCCTTCCTTTCTTTCCCTCTCTCCCTTCTCCTCCTCTCC
CCTGCCCTTTCCCCCTTTCTTTTTTTCTCTCTTCCCCTTCTCCCCCTTCC
TCTTTCCTCTTCTCCTTTCTTTCCCCTCTCCTTCTTCTTCTTTTCCTTCT
CTTTCCCTTTCCTCCCCCTCTTTTTCCTTTTCCCCTCTCTTTCTCTTCCT
CCCTCTCCCCTTCTTCCCTCTTCTCTTCCCTTCTTTTTTTTCTTCTTCCT
TCCTCCTTCTTCTCTTTCCTTCCCCCTCCTTCCTTCTTTTCCTTTTCCTT
CTCTTTCTTTTTCTCTCTCCTCTTCTCCCTTTTTTCTCTCTCCTCTCCTT
CTCTCCCTTCCTTTTCTCCCCCCTCCTTCTTCTTGTTCTTTTCTCTCTTC
TCCCCCTCTCCCTTCTCTCTTTTTTCTCTTTCCCTCTCTCCCTCCTCCTC
CTTCTCCCTCCTTCTCCTCCTCTCTTCCTCTCTTTTCTCTTTTCCTTCTC
TCTTTCTTCCCTTCCTTCG
NNNCCCTGACGGNTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCATCATGAG
ATATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTGTCCTG
GATTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGTCCTGG
CTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCAATCTCT
GGAGTTAGTTGTTATAGTTGTCTTTGTTAAGAGATTGTTCCTCTGTTGAT
TTTGTTACCCTCTATCAGCAGGCGTGGGAGACAAGCTCTCTTCTCTGAGT
TTCAGTGGTCAGAGCAGTCTCTGTAGGCAAGCTCTCCTCTCTCAGAGAAG
GTGTACAGTTATCTGGTGTTTGGACCTCCTGGCTGAAGGTGAAGGTTTTT
TTTTTGCCCTTTCCCAGAAGCTGTGTTGCTTTGGCCAAAAAGGTGGCCAG
TTGTCTGGAGTCGAAGATGTCGCCGCCTCAGAAGCTCTGTGGCTCTTGTC
CGGAAGGAGGCCGGCTGTCTGGAGCTGAGGTTGGCGCCGCCTCAGAAGCT
CTGTGGCTCTTGCCGGGAAGGTGGCTGGTTGTCTGGAGCTGAAGATGGCG
CCGCCCCAGAATCTCTGCGACTCTCTCGCCCGTCCCAGAAACGGCTGGCA
CTCTGTATTCCACACGGTCACCCGTGCAGCCTGCCCTCCGCGGAGTCCCA
GAGCCAAGAAGGCTCCCGCCGGCGCCTGTGCCACAAACCTCTCAGGCCGG
ACAGACCCCCGTGCTCTCACCAGGAAGGTGGTTGGCTGTCTGGAGCTGAA
GATGGCGCCGCCCCAAAAGCTCTGCCGGATGATTGTTTTGATGAGTTCTT
GGATTTCGTTTACGAGAATATTATTGAGTAATTTTTGCCCCCTTACTCCC
TAAGGGGAAATTGGTCTGAAAACCCCTCTTTCTTTTTTGGGGACTTTTTT
TGGGTTTTGACATCCAAAAAAAATTTTGGTTTTTTATTAATAGAAACTGG
GGTGAAAAAAACCCCCCCGTTTCCTTCTTCTTTTGTAAAAAATCTGGCCT
CACACCATCCATTATTTTTTTCTTTTTTCTGGGCGGGGAAGAAACCTCCT
CCCTCTCTTTTCATTACTTCCTGCCGGTTCTTTTCTTTTTGTGTTTCATA
ATTTAAATATATTCTCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no193_c01.b1 MSMg01no193_c01.b1 CHROMAT_FILE:
MSMg01no193_c01.b1 PHD_FILE: MSMg01no193_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:11:22 2005
         (414 letters)



>mm_chr3_80305407_80306219
          Length = 813

 Score =  733 bits (379), Expect = 0.0
 Identities = 394/399 (98%), Gaps = 1/399 (0%)
 Strand = Plus / Minus

                                                                       
Query: 16  gaattctattctattataaacatgatggtgctaatcctagcaattagaaagcagaggcag 75
           |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 742 gaatgctattctattataaacatgatggtgctaatcttagcaattagaaagcagaggcag 683

                                                                       
Query: 76  gcagatctctgtgagtggcagcttaccctgattttcatagtgagttccaagaaagctcaa 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gcagatctctgtgagtggcagcttaccctgattttcatagtgagttccaagaaagctcaa 623

                                                                       
Query: 136 taatgagacttaagcttagttgctatttcaagtgctttctggagaagaggtcaaaatcat 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 taatgagacttaagcttagttgctatttcaagtgctttctggagaagaggtcaaaatcat 563

                                                                       
Query: 196 gtttaattaaatcatactttatgtgaagatatgagaatgtccagagtaagctgacttatt 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gtttaattaaatcatactttatgtgaagatatgagaatgtccagagtaagctgacttatt 503

                                                                       
Query: 256 taatgttatctaatgccttcagggtttcattatgttacttcggaacataagtttaactca 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 taatgttatctaatgccttcagggtttcattatgttacttcggaacataagtttaactca 443

                                                                       
Query: 316 tgttcatcaattgatattgagatcttttttttttaattggctgtgttcttttcctattac 375
            ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 442 cgttcatcaattgatattgagatc-tttttttttaattgcctgtgttcttttcctattac 384

                                                  
Query: 376 ccatttttgtggccttccacagaactaatttcacagtta 414
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ccatttttgtggccttccacagaactaatttcacagtta 345


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 813
Length adjustment: 9
Effective length of query: 405
Effective length of database: 804
Effective search space:   325620
Effective search space used:   325620
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)