Query= MSMg01no193_e09.b1 MSMg01no193_e09.b1 CHROMAT_FILE:
MSMg01no193_e09.b1 PHD_FILE: MSMg01no193_e09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:11:36 2005
(441 letters)
>mm_chr3_130090470_130091310
Length = 841
Score = 737 bits (381), Expect = 0.0
Identities = 396/401 (98%)
Strand = Plus / Plus
Query: 6 aatcgctggccaagtgttgaagtagtagaaccccagcttgtcctgctgtgggcagaattt 65
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 206 aatcactggccaagtgttgaagtagtagaaccccagcttgtcctgctgtggacagaattt 265
Query: 66 aggacatctcattttcccttgccctttcaaaatagatggcaaagtcaaaggaattgtgaa 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aggacatctcattttcccttgccctttcaaaatagatggcaaagtcaaaggaattgtgaa 325
Query: 126 aattcaccaactggggaggatggatgctgagtgcttagtgttctcaagggctgtccatca 185
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 326 aattcaccaactggggaggatggttgctgagtgcttagtgttctcaagggctgtccatca 385
Query: 186 gcctctctgcatgtagatggctggaaacttgggtgggtatcccttcataaaggacagagt 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gcctctctgcatgtagatggctggaaacttgggtgggtatcccttcataaaggacagagt 445
Query: 246 tcacaatagaggcttttctcatgtcctttaaaaacagagtgtttaggttagcatgtgggg 305
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 446 tcacaatagaggcttttctcatgttctttaaaaacagagtgtttaggttagcatgtgggg 505
Query: 306 taatcgggctcattatcacatctttatgcatatgtgtttaggatcattattctcatttgc 365
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 506 taatcgggctcattatcacatctttatgcatatgtgtttaggatcattattcacatttgc 565
Query: 366 cccccacccccgactacctgccccaccctgccccgtgcttc 406
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 cccccacccccgactacctgccccaccctgccccgtgcttc 606
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space: 359424
Effective search space used: 359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no193_e09.g1 MSMg01no193_e09.g1 CHROMAT_FILE:
MSMg01no193_e09.g1 PHD_FILE: MSMg01no193_e09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:11:36 2005
(376 letters)
>mm_chr3_130143493_130144268
Length = 776
Score = 688 bits (356), Expect = 0.0
Identities = 374/386 (96%), Gaps = 10/386 (2%)
Strand = Plus / Minus
Query: 1 cacctaaactcatgcaatagaaagaaatattcaagagaaagcaagaccagctcttaccac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 cacctaaactcatgcaatagaaagaaatattcaagagaaagcaagaccagctcttaccac 458
Query: 61 tttccaccccgaaaaacgctaactggcccccgaattgtgtgaaacttggccccagtcggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tttccaccccgaaaaacgctaactggcccccgaattgtgtgaaacttggccccagtcggt 398
Query: 121 gtgaaaactggctgaaatctgcatgaaaggctgtctgggtttgtcaaagtagttcgtgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gtgaaaactggctgaaatctgcatgaaaggctgtctgggtttgtcaaagtagttcgtgaa 338
Query: 181 ctttggccaaactttctcggctcctggtccaagtcttagtttgtaatgcaacgtgaaacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ctttggccaaactttctcggctcctggtccaagtcttagtttgtaatgcaacgtgaaacc 278
Query: 241 acgtggatttcagatggtgtcaggtttcaccttggaaatttggcctagctttctaatcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 acgtggatttcagatggtgtcaggtttcaccttggaaatttggcctagctttctaatcaa 218
Query: 301 tcatc----------accgttagtaacgatgaaagccatcacacctttctgggaaaaaac 350
||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 217 tcatcaccgttagtaaccgttagtaacgatgaaagccaacacacctttctgggaaaaaac 158
Query: 351 acggaggactggctgatgacaggcta 376
|| |||||||||||||||||||||||
Sbjct: 157 actgaggactggctgatgacaggcta 132
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space: 281489
Effective search space used: 281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
