BAC Information

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BAC

Clone NameMSMg01-193L01
Chromosome3 (Build37)
Map Location 87,196,704 - 87,197,353
singlet/doubletsinglet
Overlap genenone
Upstream geneLrba, Mab21l2, EG667024, LOC100042319, Dclk2, EG625055, Cd1d2, Cd1d1, LOC667897, Kirrel1, LOC100042355, Msr2, Cd5l, Fcrl1
Downstream geneFcrl5, Etv3, EG546801, Arhgef11, EG625281, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-193L01.T7 (MSMg01no193_l01.b1)MSMg01-193L01.TJ (MSMg01no193_l01.g1)
ACCAG382888AG382889
length737724
length of high quality
(start - end)		320 (36 - 355)650 (75 - 724)
definitionCHROMAT_FILE: MSMg01no193_l01.b1 PHD_FILE: MSMg01no193_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:16 2005CHROMAT_FILE: MSMg01no193_l01.g1 PHD_FILE: MSMg01no193_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTTT
AGTTCCCTGCTCCATTTTAAACTGGGATGTTGTTTGTTGTTGGTTTTTTT
TTTTTTAACATTTTGAGTTCTAGTCACTAATTCCAGATGTACAGTTGATA
ATCTTCTTTCCTATTCTGTAGGCTGCCTCTGCATTTGAGTGATGGTGCCC
TTCATTGTACAGATTTTTTAGTTTCCTAAGGTCCTGTTTATTAGTCATTG
GTTTACATTCTCCTACTGTCAGGCTTTGTTCAAAGAGTCCTTTTCTGGGT
TAATAAGTTTAAGTGCAATCCTGCTGTCTCCTCTATCAGAGCCAAATACC
AGATCTTATATGACATCCTTGACCAAGTTGGAGTTGAGCTTTGTGCTGGC
TGGTAGATCCCCACTGAAATAAATGAAAATTTTTCCGCCTGACCACCTTT
GTTTGAATACGCCTGTCTCCTCTCCAGTGTACACCGTTGCTTTTCCAGTT
TTACAAATATCCTGTTTAGATATGTCTGCCCTTTTACTTTGCCTCTTCCT
CCCCTTTCCCTTTGTTTTTCCCCCCTCTGCCACGTTTATTCCCTACTCTC
GCATCCTCCTTCTCCCTTTTTCCGCATTTTTCACATCCTTTCCTTTCCCC
CCTTTCTTTTTTTTTATCCCCCATGCCTCGTTTTTTTCACCTCCCTTATC
CCCCCTTTTCCCCTGTTTTTAGACCTTCCATCTTTTG

ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGCTGCCTCCTGAGAGAACCCAATA
TTGGACCCCTCCAAGCTAGCTCTGGCCTCAAAGAAAGAGTGTCAGCTAAA
CTAGCACAGGTGGGGATCTCTCCCAGTGTCTCTTGTTTCCTAAACTTCTT
CAGTGGAAGATCCCAAAGCGTCTCTATTTGATGTATCACCTCGGACAGAC
GACTCTAACCACTGGCTAAGAGGATGTTCATACTGAAGCCATGCAACAAT
TAGTCCAGGTTCATCAACAAATAAATTCACCAAATAAGCACCTATACTTC
CAGGTACCAAAGACATGAAACGTCTCCAAAAGAGGGATGGCAAGACTTTA
CACGTGTCAGGAGGACCTAAGTCTCAACTTCTTTTAATCCTGGTAAATAT
TACAGGCTGGATAAAGGCTTTTTCATGTAAAATGTGAAAGACTCCAGGCA
GGAGGACTGGGCTAGAGTAATCCCAGACATGAAAGATAGCTTCCAGGGTC
TTACTGAAGGCTGTGTAGAAGGAGATACTATCAATGTGAAGAATACATTT
TTGTTTGTTTTTGAGACAGGGTTTCTCTGCATAGCCCTGGCTATGCTGGA
ACTCACTCTATAGACCAGACTGGCCTGGAATCTGGAGATCCCCCTGCCTC
TGCCTCTAAGTGCTGGAACGAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no193_l01.g1 MSMg01no193_l01.g1 CHROMAT_FILE:
MSMg01no193_l01.g1 PHD_FILE: MSMg01no193_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:16 2005
         (650 letters)



>mm_chr3_87196630_87197679
          Length = 1050

 Score = 1249 bits (646), Expect = 0.0
 Identities = 649/650 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgctgcctcctgagagaacccaatattggacccctccaagctagctctggcctcaaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 ctgctgcctcctgagagaacccaatattggacccctccaagctagctctggcctcaaaga 665

                                                                       
Query: 61  aagagtgtcagctaaactagcacaggtggggatctctcccagtgtctcttgtttcctaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 aagagtgtcagctaaactagcacaggtggggatctctcccagtgtctcttgtttcctaaa 605

                                                                       
Query: 121 cttcttcagtggaagatcccaaagcgtctctatttgatgtatcacctcggacagacgact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 cttcttcagtggaagatcccaaagcgtctctatttgatgtatcacctcggacagacgact 545

                                                                       
Query: 181 ctaaccactggctaagaggatgttcatactgaagccatgcaacaattagtccaggttcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ctaaccactggctaagaggatgttcatactgaagccatgcaacaattagtccaggttcat 485

                                                                       
Query: 241 caacaaataaattcaccaaataagcacctatacttccaggtaccaaagacatgaaacgtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 caacaaataaattcaccaaataagcacctatacttccaggtaccaaagacatgaaacgtc 425

                                                                       
Query: 301 tccaaaagagggatggcaagactttacacgtgtcaggaggacctaagtctcaacttcttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tccaaaagagggatggcaagactttacacgtgtcaggaggacctaagtctcaacttcttt 365

                                                                       
Query: 361 taatcctggtaaatattacaggctggataaaggctttttcatgtaaaatgtgaaagactc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 taatcctggtaaatattacaggctggataaaggctttttcatgtaaaatgtgaaagactc 305

                                                                       
Query: 421 caggcaggaggactgggctagagtaatcccagacatgaaagatagcttccagggtcttac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 caggcaggaggactgggctagagtaatcccagacatgaaagatagcttccagggtcttac 245

                                                                       
Query: 481 tgaaggctgtgtagaaggagatactatcaatgtgaagaatacatttttgtttgtttttga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tgaaggctgtgtagaaggagatactatcaatgtgaagaatacatttttgtttgtttttga 185

                                                                       
Query: 541 gacagggtttctctgcatagccctggctatgctggaactcactctatagaccagactggc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 gacagggtttctctgcatagccctggctatgctggaactcactctatagaccagactggc 125

                                                             
Query: 601 ctggaatctggagatccccctgcctctgcctctaagtgctggaacgaaag 650
           ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 124 ctggaatctggagatccccctgcctctgcctctgagtgctggaacgaaag 75


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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