BAC Information

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BAC

Clone NameMSMg01-195B04
Chromosome3 (Build37)
Map Location 126,939,935 - 126,940,334
singlet/doubletsinglet
Overlap genenone
Upstream geneArsj, Camk2d, Ank2, LOC100043749
Downstream geneLOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1, T2bp, BC002199, 5730508B09Rik, LOC100043382
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-195B04.T7 (MSMg01no195_b04.b1)MSMg01-195B04.TJ (MSMg01no195_b04.g1)
ACCAG383744AG383745
length732866
length of high quality
(start - end)		590 (54 - 643)---
definitionCHROMAT_FILE: MSMg01no195_b04.b1 PHD_FILE: MSMg01no195_b04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:10 2005CHROMAT_FILE: MSMg01no195_b04.g1 PHD_FILE: MSMg01no195_b04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACACAAACATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGA
GAATCCGCGGAATTCCCTACTATTCTCCAGGGGAAAGGGTAACAATGTAA
AAACACTAGCTTTCCTCCATGTAATCTCTTTGACTTCTGCTCTGATCACC
ATACTTCAGAAATCCCTTACCTACTCTTTCAGTTTTCTGCAGATTTGGAG
GAAACACTGTCTTATTAGCTTCTGTTTCTTTTGCTTTCTTCTTTTTAATT
TTATTTATTTATTTTGAGAAAAGAAGTCTTGTAGCCCAGGCTAGCCTAGA
ACTCACTGTGTAGATGAGCATGGCCTTGAAAGTCTAATACTTTCTTTCTC
AGCCTCTGGCGTGCTGGGATTATAGGCAGGTACCACCATGCATACTTAGG
GTCAAAACCAGGGCTTTGTGCATGCAAGGCAAGTACTCTTCCAACTGAGC
TACAGCCCAGCCTTCTACTCTGTGTTTCTAATGTCCACAGTGTAGCTTCT
TGATCTTTGGCTTAAGGTCAAGTGTAATTCCTAAAACATTTCTACCCGGG
GCTTAGTGACTTACATATTTTTCCTTCTCAGCCTGAACACATCTGAGCAA
TTTTAGGGACTGCATTTGAAAAATTCCAAAGCCCACTTTAGCACCTTCTA
GAAGACGTGGACACTCAAGTCAGATGAAAAAACTAATGATGTGCAAGCTT
GAATAAATGACCTAGTGGATTCCATTTTACTG

ATACCAGCGTATAATCAACGCCGGCAAAANNGGTTTTCCACGGGGGGNNN
NNNNCNCCTTTCCAAAAAAAAACTACCAAAAAAAACTATAACCCTTCAAT
TTATATCTTTCTTCCACCCACCGCAATTTCTCCAAACCAGCGCATCAAGC
CTCCTCACTCTCCCCTATTCGCGTACTACATACGCCTTGGCAAGGTCCCA
TTGTAGGCTCGTCGCGGTAGGGTGTCCAGCGTACCCTAATCGTAATCCAG
ATTGAAACATATGTGGAAGGCATATTCGATAAAAACAAAAAGCGCGAACA
AAGCGACACGAACGGAGTGCTATATTTTTTATTATTCACTTACAGTAATA
CAAATACCAAGAATATGAGCCAAAAATGTAACAACTACTACTATCCCTAT
CCCAGATGACCCACCTTTAGCCTGTCCACCTTTATGATCCTCTTCAAAAA
TTGAAACACAAAAAAGAAAACCATTATACTCAACTTTCCCACCTTCTCCG
AATGTCATCACCAGGTGTTTTCTACCCCCAATATATACTTAAGTCCAATA
TTTTTATCACCAAATACCAAATCGCCCCACATAATACATACTTACATGTA
AGATACGTACCTATTGTTAATTTCCAGCATAATTACCTAGGTATACGGAG
TTGGCATATATCCGTTACCCCGCGAACGAGAAATAAATAGCATCAATTCA
AGTCACACGATTACAACCCAGCTCGGCCCCTCCGCCTCATACGTACTCCA
CCCCTACGGCTTCACTTCACTCCCAGTCGCAAAATAAACATACACCTCCA
TTCCATTATCCAATCAATACACTGCTCATTCTCGCCAATACTCCGCTGCA
CCCGGCCCTTCACCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no195_b04.b1 MSMg01no195_b04.b1 CHROMAT_FILE:
MSMg01no195_b04.b1 PHD_FILE: MSMg01no195_b04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:10 2005
         (590 letters)



>mm_chr3_126939935_126940924
          Length = 990

 Score =  623 bits (322), Expect = 0.0
 Identities = 367/400 (91%), Gaps = 28/400 (7%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattccctactattctccaggggaaagggtaacaatgtaaaaacactagctttcctcca 66
           |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 400 gaattccctactattctccaggggaaagggaaacaatgtaaaaacactagcgttcctcca 341

                                                                       
Query: 67  tgtaatctctttgacttctgctctgatcaccatacttcagaaatcccttacctactcttt 126
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tgtaatccctttgacttctgctctgatcaccatacttcagaaatcccttacctactcttt 281

                                                                       
Query: 127 cagttttctgcagatttggaggaaacactgtcttattagcttctgtttcttttgctttct 186
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 cagtgttctgcagatttggaggaaacactgtcttattagcttctgtttcttttgctttct 221

                                                                       
Query: 187 tctttttaat----------------------------tttatttatttattttgagaaa 218
           ||||||||||                            ||||||||||||||||||||||
Sbjct: 220 tctttttaattttatttatttatttatttatttatttatttatttatttattttgagaaa 161

                                                                       
Query: 219 agaagtcttgtagcccaggctagcctagaactcactgtgtagatgagcatggccttgaaa 278
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 agaagtcttgtagcccaggctagcctagaactcactgtgtagatgagcatggccttgaaa 101

                                                                       
Query: 279 gtctaatactttctttctcagcctctggcgtgctgggattataggcaggtaccaccatgc 338
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 100 gtctaatactttctttctcagcctctggcgtgctgggattacaggcaggtaccaccatgc 41

                                                   
Query: 339 atacttagggtcaaaaccagggctttgtgcatgcaaggca 378
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 40  atacttagggtcaaaaccagggctttgtgcatgcaaggca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 990
Length adjustment: 10
Effective length of query: 580
Effective length of database: 980
Effective search space:   568400
Effective search space used:   568400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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