CCGGTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAGA
TCCGCGGAATTCTGAATATATTCCCAAGTGAAGCCTAGTGGTAAAGTGCT
TATCTACTATGTGTAAGGTCTTAGGTTCAATCTCAAGTACCATACGAAAA
TAAACAAATGCCATTTGATAAAAATTGTAGTGGAAGAGGCGCGAAGGCTG
GCTGTTGTGACTTGAAGGGTGACTTGAGAAACTGAAGTAGTGGCCATAGG
AAGAGTGGGCTCCATACACAGCATCCCAGTCAAATGTACCCTGATCCCGG
ACAAGGGAGGGGCTACGCAGCACCGTTAGAGATGGTGACATCCTGGAGAG
ATGAAGGAAAGATGGTTTTAAGAAGCAGATGATCTAAATAAATAAATAAA
TAAATGAAAATGAAAAAAGAAGCAGATGATCTTAATGGTCAGGTTTGATT
TTGAGTTGAGATAAGGTATCTAAGAAGAAGTATGTAGGTATTTACAGATG
GATACAGGAGTAACCAGGATTTTGTCACAAAGAAAATGGCTAACTTATGG
GGAGCCTTAGTAAAAGAAAGCATAGCATGGAAGAGGAGGGTAGTGCTCAG
CTCTCTACAACAGAGCTGTTTCTATTCTTGGCTCCCGGGCTCCCGGGCTC
AGGGGAGGGCCCACCTATACAACTCAAACAGGAAGCCACTGCCCTGGAAA
AAGAATCCCCTTGGCAAAAGCTGGGACCTTGGTCAAGGATGCACCTGGN

NNNCCCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATTAAGAGAAGCATCGACAT
TTCGGCACTTTGGCACATTCAAGGTAGGACCATGGGCATGTGTATGGGGG
GTGGGGGCGNCCNNCCNCCNNCNNCNCCCCCCCCCNNCTCCTCTTTCTTC
TCTCTCCCTCCCCCTCCCCTTTCCTCCCTCTCCTTTCCCCTCCTCCCCCT
TCCCCTCTCCTCCCCCTTTTCTCCCCCTTCCTCCCCCCCTCCCCTCTCCC
CCTCCCCTCCTTCCCCCTCCCCCCCCCCTCTTTTTTTTTTCCCCCCCCCC
CCCCCTTCCCCCCTCTCCCTCTTCTTTCCCCCCCCCCCCCCCCCCTCTCT
CCCCTTTCCCCCCTCTTCCCCCTTTCTCTTTTGCCCCCTCCTCCTCCTTC
TCCCCTTTTTCCTCCCCCTTCTTCCCCTTTTCTTCTCTTTCCCCTTTCTC
CTTTTCCCCTCCCTTTTTTTTCCCCCCTTTCTTCCTTTTTTTCCCTTCTT
GTCCCCCCTTCTCCTCCCCCCCTTTCCCCCTTTTTCCTTTTCTTCCTCCC
TCTCTCCTTTCTCCCTTTTTCTTCCCTCCCTCTCTTCTCCCCCTTCCTCC
TTTCCCCCCCCCCTCCCCTTTTCTCCCCTTCCCTCCCCCTCTCTCCCTCT
CTCCCCCCCCTCCCCTCCTTCCCCTCTCTCCCTCCCTCCCCCATCTTCCC
CCCCTTCCCCCACCCCCTCTCTCTCCTCCTTTCCCTCCTGCCCTCTCTCC
CTCTCCTCCTTCCTCCCTTTTCTCCCTTCCCCCCTCCCTTCTTTTCCC

Query= MSMg01no195_d20.b1 MSMg01no195_d20.b1 CHROMAT_FILE:
MSMg01no195_d20.b1 PHD_FILE: MSMg01no195_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:24 2005
         (668 letters)



>mm_chr3_51106667_51107734
          Length = 1068

 Score = 1189 bits (615), Expect = 0.0
 Identities = 637/651 (97%), Gaps = 12/651 (1%)
 Strand = Plus / Minus

                                                                        
Query: 17   gcttatctactatgtgtaaggtcttaggttcaatctcaagtaccatacgaaaataaacaa 76
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1068 gcttatctactatgtgtaaggtcttaggttcaatctcaagtaccatacgaaaataaacaa 1009

                                                                        
Query: 77   atgccatttgataaaaattgtagtggaagaggcgcgaaggctggctgttgtgacttgaag 136
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1008 atgccatttgataaaaattgtagtggaagaggcgcgaaggctggctgttgtgacttgaag 949

                                                                        
Query: 137  ggtgacttgagaaactgaagtagtggccataggaagagtgggctccatacacagcatccc 196
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948  ggtgacttgagaaactgaagtagtggccataggaagagtgggctccatacacagcatccc 889

                                                                        
Query: 197  agtcaaatgtaccctgatcccggacaagggaggggctacgcagcaccgttagagatggtg 256
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 888  agtcaaatgtaccctgatcccggacaagggaggggctacgcagcacagttagagatggtg 829

                                                                        
Query: 257  acatcctggagagatgaaggaaagatggttttaagaagcagatgatctaaataaataaat 316
            |||||||||||||||||||||||||||||||||||||||||||||||    |||||||||
Sbjct: 828  acatcctggagagatgaaggaaagatggttttaagaagcagatgatc----taaataaat 773

                                                                        
Query: 317  aaataaatgaaaatgaaaaaagaagcagatgatcttaatggtcaggtttgattttgagtt 376
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772  aaataaatgaaaatgaaaaaagaagcagatgatcttaatggtcaggtttgattttgagtt 713

                                                                        
Query: 377  gagataaggtatctaagaagaagtatgtaggtatttacagatggatacaggagtaaccag 436
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712  gagataaggtatctaagaagaagtatgtaggtatttacagatggatacaggagtaaccag 653

                                                                        
Query: 437  gattttgtcacaaagaaaatggctaacttatggggagccttagtaaaagaaagcatagca 496
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652  gattttgtcacaaagaaaatggctaacttatggggagccttagtaaaagaaagcatagca 593

                                                                        
Query: 497  tggaagaggagggtagtgctcagctctctacaacagagctgtttctattcttggctcccg 556
            ||||||||||||||||||||||||||||||||||||||||||||||||||||        
Sbjct: 592  tggaagaggagggtagtgctcagctctctacaacagagctgtttctattctt-------- 541

                                                                        
Query: 557  ggctcccgggctcaggggagggcccacctatacaactcaaacaggaagccactgccctgg 616
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540  ggctcccgggctcaggggagggcccacctatacaactcaaacaggaagccactgccctgg 481

                                                               
Query: 617  aaaaagaatccccttggcaaaagctgggaccttggtcaaggatgcacctgg 667
            |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 480  aaaaagaatcgccttggcaaaagctgggaccttggtcaaggatgcacctgg 430


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space:   696164
Effective search space used:   696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)