BAC Information

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BAC

Clone NameMSMg01-195E07
Chromosome3 (Build37)
Map Location 127,107,417 - 127,107,730
singlet/doubletsinglet
Overlap genenone
Upstream geneArsj, Camk2d, Ank2, LOC100043749
Downstream geneLOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1, T2bp, BC002199, 5730508B09Rik, LOC100043382, EG668828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-195E07.T7 (MSMg01no195_e07.b1)MSMg01-195E07.TJ (MSMg01no195_e07.g1)
ACCAG383860AG383861
length732735
length of high quality
(start - end)
320 (45 - 364)290 (77 - 366)
definitionCHROMAT_FILE: MSMg01no195_e07.b1 PHD_FILE: MSMg01no195_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:26 2005CHROMAT_FILE: MSMg01no195_e07.g1 PHD_FILE: MSMg01no195_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATAATGTGGACAGAAACATCCCATGAAAGTCTGCCTATTTCAAGG
AAGGATAGCTAAGGGGAAATGTCACCCTCTCCTCCACAAAAAAAGTTCAT
TTGGGGCCCAAAGCTGTGACTAGCAGCTGTACCAGTTGCGAATTCCATTG
TTGGAGGTCTTAGGTTCTTTATCCGATCCATTTAGGCAGAAAGTGCAAGC
AAATATCTCTTGTTACTAACAAAGAAACAGATTGAAGTTCATGCTAATGT
GTCCACAGCCAGAGCCAAAAGCTTTTCAGGGTTATTACAGCTCACTGGGC
TCTTAGCCCATCTTTTCTAGCCCCTCCCCCACACTGAAGTTATGGATCAG
CCCATTGTCTGCAGCATCCCACGTGAGAGACTGATGCTACTGTTCCCTGT
GCCCTGATGTCCCCAGATTCAACCTGAAACCTGAGATTAGCATTTGGGAT
CAGTTTGACTTACAGTTGGCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTC
TTTTCTTTTCTTTTCTTTTCTTTTCTTCCTCTTCTCTTCTCTTCTCTTCT
CTTCTCTTCTCTTCTCTTCTCTTCTCATCTCTTCTCGTCTCTTCCCTTCT
CCTTCCCTAACTTTCCCTTCTCTTCACTTCTTCCCTTCACCTAGCCTTCT
TCTGGCCACTTTTATCCTACACTTCACATCAG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTCAGGGTATAGGCACAGATAA
GGAACTTCTGAATAGGACCCTGGTTGCAAAGGAATGAGCATCAACAGTCA
ACAGGCCAGGCTTCACGAAATTAAAAGCTCCTGTATAGCAAAGGAAACTA
TTAATTGACTTAAGTGGCAGCCTACACAATGGAAAAAGTCTTTGCCAGCT
ATACATCTGACAGAGAATAAGTGTCTTGAATATATAAAGAACTAAAAGAC
CTAAACAACAAGAAAATGAGCAACACAATTTTAAAATGGGCTATGGAACC
GAGCAGAGCTCTCTTTATATTAACCACCCCCCGCTGCTAAGCAGTTTTAA
AAGTGTTCACCATCCTTAGCCAACAAGGAAATACAGAATCTACATTGAGA
TTTCACCTTACTCAAGGCAAAAATGGCTAAGATTAAGAAAATAAACGACA
GCAGATACCGCTGAGGCTCTAGGGAATATGAACTGCCATTCACTGATGTG
CAAACTGGTACAACTGTCATGGAAATCAGTTCCTTCAAAAGCTAGAAATA
AATCTACCATGTGACCTCGCTATAGTGCTCCTGGGAGTATATATATATTT
CCTACTACAGAGATGTGTATTCATCCTCGTTCACTGCCACTCCATACAGA
ATAGCCAGGTTAGTCTAAACCTCTACCACCTGATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no195_e07.b1 MSMg01no195_e07.b1 CHROMAT_FILE:
MSMg01no195_e07.b1 PHD_FILE: MSMg01no195_e07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:26 2005
         (320 letters)



>mm_chr3_127107213_127107932
          Length = 720

 Score =  607 bits (314), Expect = e-178
 Identities = 314/314 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccataatgtggacagaaacatcccatgaaagtctgcctatttcaaggaaggatag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gaattccataatgtggacagaaacatcccatgaaagtctgcctatttcaaggaaggatag 459

                                                                       
Query: 65  ctaaggggaaatgtcaccctctcctccacaaaaaaagttcatttggggcccaaagctgtg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ctaaggggaaatgtcaccctctcctccacaaaaaaagttcatttggggcccaaagctgtg 399

                                                                       
Query: 125 actagcagctgtaccagttgcgaattccattgttggaggtcttaggttctttatccgatc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 actagcagctgtaccagttgcgaattccattgttggaggtcttaggttctttatccgatc 339

                                                                       
Query: 185 catttaggcagaaagtgcaagcaaatatctcttgttactaacaaagaaacagattgaagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 catttaggcagaaagtgcaagcaaatatctcttgttactaacaaagaaacagattgaagt 279

                                                                       
Query: 245 tcatgctaatgtgtccacagccagagccaaaagcttttcagggttattacagctcactgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tcatgctaatgtgtccacagccagagccaaaagcttttcagggttattacagctcactgg 219

                         
Query: 305 gctcttagcccatc 318
           ||||||||||||||
Sbjct: 218 gctcttagcccatc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)