BAC Information

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BAC

Clone NameMSMg01-195H06
Chromosome3 (Build37)
Map Location 77,707,781 - 77,708,144
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041625, LOC100041635, Dnmt3a-ps1
Downstream geneEG626461, LOC667526, LOC626479, LOC100041691, LOC383883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-195H06.T7 (MSMg01no195_h06.b1)MSMg01-195H06.TJ (MSMg01no195_h06.g1)
ACCAG383969AG383970
length763756
length of high quality
(start - end)
---364 (84 - 447)
definitionCHROMAT_FILE: MSMg01no195_h06.b1 PHD_FILE: MSMg01no195_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:41 2005CHROMAT_FILE: MSMg01no195_h06.g1 PHD_FILE: MSMg01no195_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGCCCCAATAATTGCGGCGCTAAANGAGNCANAATTCGAACCCGCAGNG
GAANNNNNGANATTCCNGGCACGGGAGANANANGGGNGNNGGGNNNNGNN
AAAGGNNNNNNCAGNAAANACCCAGNNGANCAAGAGNNNAAACCCCCCNC
AGAGANAGCCCAAACAGCGGACAGCACCGAAGGACNACACCAAACAGAAC
CACCACAGCACCACAGGGACGAAGCCCACNNGACCACGGAGAGCGANNAC
ATTTTTGTGTTCTTGGAACCTGCCTGAGACAATTACATTTCGTATCTTGC
AACAACATTCAAGAGGTTTTTTTTTTTTTAGGGCNCNNGCGAAGAACAGA
CAGAGAGAGGATCACCCCCCCCGCAACCGAAGCCACAGAGAAAGAAACGG
GAAGACGACACCCCGCCCCCACCACAGNGCAAAAGGCCGAACAGCACCAG
CAGCCACGGCCCCACGACAGCACGACAAAACACCCACAAACACAACAACC
CCAAGAACAACCCGCACGAAAGACAGGCCCAGACAGCGACAAACGCACGA
AACGCCCAAAAAACCACCCAAAACACGCAAAAACGCCCCCGCGAAACCGC
CAAAGACACCGCCCAAACCACAACCCGAAAAACCCCACAGAAAACCGAAA
CAACAAAAGCCCGAAAACGCAACTATTTTTTTTCCCCGCAACAAAACCAT
AACTAATCACTCGCATTTGTCACCCACACACCTCCTACCCAACTCTCTTT
TATCCCACCTCCC
CTTTTCTACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTATGTGATTTCATTA
ATGTTTACTATAAAATAGGGTCTTCATTCATAAGCTGAGAACAGTGAACC
AGGGATATAGGTAATACAGAGGTATATTGGGAAGAACTGATAAGATAATG
AATAGGGCTATAAAAACATGAGAAAGCAAGGATTGGAGAAATAGAAATCA
TTGCCATGTATATAATGTTGACATTAATCTCATTAATCTGAAATGAGACT
TATCTCAGGGATTAGATAATAGTAGCTATTGGTTTAATAACGGGGATTAG
CGTTTACAGACAGCCCTTTCCAAAAAGTCTGCCTCTAACCAGCTGACCAA
AGCAGACTTCACATGTCTAGGTATTATTGCAGAATGATTTCTGGAGGAAG
ATGTGGTGAGGCACAGTCCTACTGCAGTCTATGGAGCCTTTACTACCATT
TGCATACCATGGAGTTGATGCTTGATGGTGCCATAAAACCTACTTTTTCT
ATCCAGTGCTCTGTATATTGTTGCCGTTTTACACACGTACTCTAACTCTT
AAAATCTATTCCTTTGTAGAACTTATTCTCTACCATCCTTTGCGTTTTAT
CTAATATTTATGCTCCGACAACTGTTTCCTTGTGTCTCATAATGTTTTCT
CCAAGGGTTTCTGCATTCTCTTCCATGATATTTTTAGTATTCGGTGTGTA
ATTACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no195_h06.g1 MSMg01no195_h06.g1 CHROMAT_FILE:
MSMg01no195_h06.g1 PHD_FILE: MSMg01no195_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:41 2005
         (364 letters)



>mm_chr3_77707581_77708344
          Length = 764

 Score =  688 bits (356), Expect = 0.0
 Identities = 362/364 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actatgtgatttcattaatgtttactataaaatagggtcttcattcataagctgagaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 actatgtgatttcattaatgtttactataaaatagggtcttcattcataagctgagaaca 505

                                                                       
Query: 61  gtgaaccagggatataggtaatacagaggtatattgggaagaactgataagataatgaat 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtgaaacagggatataggtaatacagaggtatattgggaagaactgataagataatgaat 445

                                                                       
Query: 121 agggctataaaaacatgagaaagcaaggattggagaaatagaaatcattgccatgtatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agggctataaaaacatgagaaagcaaggattggagaaatagaaatcattgccatgtatat 385

                                                                       
Query: 181 aatgttgacattaatctcattaatctgaaatgagacttatctcagggattagataatagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aatgttgacattaatctcattaatctgaaatgagacttatctcagggattagataatagt 325

                                                                       
Query: 241 agctattggtttaataacggggattagcgtttacagacagccctttccaaaaagtctgcc 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agctattgggttaataacggggattagcgtttacagacagccctttccaaaaagtctgcc 265

                                                                       
Query: 301 tctaaccagctgaccaaagcagacttcacatgtctaggtattattgcagaatgatttctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tctaaccagctgaccaaagcagacttcacatgtctaggtattattgcagaatgatttctg 205

               
Query: 361 gagg 364
           ||||
Sbjct: 204 gagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space:   268025
Effective search space used:   268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)