Query= MSMg01no195_i24.b1 MSMg01no195_i24.b1 CHROMAT_FILE:
MSMg01no195_i24.b1 PHD_FILE: MSMg01no195_i24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:49 2005
(707 letters)
>mm_chr3_117203394_117204500
Length = 1107
Score = 1077 bits (557), Expect = 0.0
Identities = 566/569 (99%)
Strand = Plus / Minus
Query: 139 tcctgttggccttgtgtagccagagtccgttgtccttactccaacctctggcgaacttgt 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1105 tcctgttggccttgtgtagccagagtccgttgtccttactccaacctctggcgaacttgt 1046
Query: 199 gtttcctaccccagcatttcgatttttcagaatgaaatacaaacatagtcactccgtgtt 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1045 gtttcctaccccagcatttcgatttttcagaatgaaatacaaacatagtcactccgtgtt 986
Query: 259 taacctgtggagattgttcacccgcacctcatcatgttgttacatggatcagttgttttt 318
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 985 taacctgtggagattgttcacccacacctcatcatgttgttacatggatcagttgttttt 926
Query: 319 atggctgagtagcattccttcttgtgacaaattatcagccaaggatctaagataaagctc 378
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 atggctgagtagcgttccttcttgtgacaaattatcagccaaggatctaagataaagctc 866
Query: 379 tcctcagtggccatgatctggttcactgcaccaagacaagggctttgcattccaaccatt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 tcctcagtggccatgatctggttcactgcaccaagacaagggctttgcattccaaccatt 806
Query: 439 tcttagtgagaggcaagaaggagttgctggtgttctgtctttcttcagggatattcaaag 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tcttagtgagaggcaagaaggagttgctggtgttctgtctttcttcagggatattcaaag 746
Query: 499 atatgtcattgaaaactgtcgagctgacaaaggacaaagggagctatccatctaagcata 558
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atacgtcattgaaaactgtcgagctgacaaaggacaaagggagctatccatctaagcata 686
Query: 559 aaattttattaatgagtgaaaatgattaaaataaattcctcctctattcactcaattaac 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaattttattaatgagtgaaaatgattaaaataaattcctcctctattcactcaattaac 626
Query: 619 tatttgaatcaattttaatttaatgtagacatgctttttagataaacaagaaacatagat 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tatttgaatcaattttaatttaatgtagacatgctttttagataaacaagaaacatagat 566
Query: 679 ttaagtagcgatgattttaagtaacaaac 707
|||||||||||||||||||||||||||||
Sbjct: 565 ttaagtagcgatgattttaagtaacaaac 537
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 707
Length of database: 1107
Length adjustment: 10
Effective length of query: 697
Effective length of database: 1097
Effective search space: 764609
Effective search space used: 764609
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no195_i24.g1 MSMg01no195_i24.g1 CHROMAT_FILE:
MSMg01no195_i24.g1 PHD_FILE: MSMg01no195_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:49 2005
(664 letters)
>mm_chr3_117162878_117163940
Length = 1063
Score = 1127 bits (583), Expect = 0.0
Identities = 637/657 (96%), Gaps = 5/657 (0%)
Strand = Plus / Plus
Query: 1 actatgattcactgaattcaaaattctgcctagttggcctgcttgatccattttaaggtt 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 actatgattcactgaattcaaaattctgcctagttggcctacttgatccattttaaggtt 260
Query: 61 taaggttgtgagtttaggctgttagcattaaaagcggtggatggagttataaaaccaaat 120
||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 261 taaggctgtgagtttaggctgttagcattataagctgtggatggagttataaaaccaaat 320
Query: 121 catgatctgcaaccacctgtaccatctatggcagtaaaatactcctgtcctctggactcc 180
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 321 catgatctgcaaccacctgtaccatctatggcagtaaaatactcctgtgctctgtactcc 380
Query: 181 atcaaatactagcaaaatccgaggatgcttggactgaattaaaagttctcacttcttttt 240
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcaaacactagcaaaatccgaggatgcttggactgaattaaaagttctcacttcttttt 440
Query: 241 aaagctattaggcagaatttgtttaccttccaaagattttgatcagggctagagcatttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagctattaggcagaatttgtttaccttccaaagattttgatcagggctagagcatttg 500
Query: 301 atttctgaggccatggttaacatctgaaaggaaagttgacatacaatgtcaatgccttgg 360
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 501 atttctgaggccatggttaacatctgaaaggaaagttcacatgcaatgtcaatgccttgg 560
Query: 361 tatttgccagacacttggtggttccctgtgtgtctcagtatacagaccccaatagctaag 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 tatttgccagacacttggtggttctctgtgtgtctcagtatacagaccccaatagctaag 620
Query: 421 ttaatatcaagtagacaggagagtgaaatagtctttcttataaagtcgtctaccaattga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttaatatcaagtagacaggagagtgaaatagtctttcttataaagtcgtctaccaattga 680
Query: 481 cagggagcaggcagaggtgcccaggaaatttctaaaggataggaagaagttaaattga-- 538
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 681 cagggagcaggcagaggtgcccaggaaatttctaaagaataggaagaagttaaattgaag 740
Query: 539 ttaatcacagatagggttggaatctaaacatcttctgtgtaaaagcctcaactgaaaaca 598
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 741 ttaatcacagatagggttagaatctaaacatct---gtgtaaaagcctcaactgaaaaca 797
Query: 599 aaccaacaaatctcttctgcccactgacttgaaatgccacttctgttaatgcttcta 655
| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 798 acccaacaaatctcttctgcccactgacttgaaatgccacttctgttattgcttcta 854
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1063
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1053
Effective search space: 688662
Effective search space used: 688662
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
