Query= MSMg01no196_d02.b1 MSMg01no196_d02.b1 CHROMAT_FILE:
MSMg01no196_d02.b1 PHD_FILE: MSMg01no196_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:39 2005
(319 letters)
>mm_chr3_106996693_106997412
Length = 720
Score = 596 bits (308), Expect = e-175
Identities = 314/316 (99%), Gaps = 1/316 (0%)
Strand = Plus / Plus
Query: 5 gaattccttcttcttc-cagcgtccagtgggtagcaaagactgggggtcttcatgctgtt 63
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttcttcttcacagcgtccagtgggtagcaaagactgggggtcttcatgctgtt 264
Query: 64 ctcctgactccctagaatggatgtgtgtagctggaaagaaatggaggttgctctggtcaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctcctgactccctagaatggatgtgtgtagctggaaagaaatggaggttgctctggtcaa 324
Query: 124 ttttgataactcagatgaaatccatgaagagccaggctatgccacagactttgacccaac 183
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttttgataactcggatgaaatccatgaagagccaggctatgccacagactttgacccaac 384
Query: 184 cagctcaaaaggccgccctggtagcagtcccttttccaattggagagtccttatcagtga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagctcaaaaggccgccctggtagcagtcccttttccaattggagagtccttatcagtga 444
Query: 244 caacaccaaccatgaaactgccttctccaagatcccaggagagtatgtggatcccccggg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caacaccaaccatgaaactgccttctccaagatcccaggagagtatgtggatcccccggg 504
Query: 304 acctgagccagtggtc 319
||||||||||||||||
Sbjct: 505 acctgagccagtggtc 520
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 720
Length adjustment: 9
Effective length of query: 310
Effective length of database: 711
Effective search space: 220410
Effective search space used: 220410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no196_d02.g1 MSMg01no196_d02.g1 CHROMAT_FILE:
MSMg01no196_d02.g1 PHD_FILE: MSMg01no196_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:39 2005
(640 letters)
>mm_chr3_107086540_107087584
Length = 1045
Score = 998 bits (516), Expect = 0.0
Identities = 533/546 (97%), Gaps = 13/546 (2%)
Strand = Plus / Minus
Query: 108 acatgcctatttcttcgatggtctggatgatggtaaaaatgtagtctgtccatgtcgggt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1045 acatgcctatttcttcgatggtctggatgatggtaaaaatgtagtctgtccatgtcgggt 986
Query: 168 agtggtggcgcacatctttattcctagcacttgggaggcagagataggcagatctctgag 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985 agtggtggcgcacatctttattcctagcacttgggaggcagagataggcagatctctgag 926
Query: 228 tttgaggctaacgtggtctaccaaattccaggacagccagggctacacagagaaaccctg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 tttgaggctaacgtggtctaccaaattccaggacagccagggctacacagagaaaccctg 866
Query: 288 tctcagaaaaatcaaccaac--------caaagcaaagcacacacgccttctgtcagtta 339
|||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 865 tctcagaaaaatcaaccaaccaaccaaacaaagcaaagcacacacgccttctgtcagtta 806
Query: 340 agttcttaagttctgatggtgaccatgctagcccctaggctttggttacacacaacaacc 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 agttcttaagttctgatggtgaccatgctagcccctaggctttggttacacacaacaacc 746
Query: 400 aggagtacctatcctattttataatgagaaataagtttctggtcttactaaggactcaat 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aggagtacctatcctattttataatgagaaataagtttctggtcttactaaggactcaat 686
Query: 460 gatatgtcctttgtcacttaggttgagggaaatatttgatccatcttcccttgcataaga 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gatatgtcctttgtcacttaggttgagggaaatatttgatccatcttcccttgcataaga 626
Query: 520 acacagacattttaagacaccgaaagagaaacaagtagtttgggatagagatcttttaga 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 acacagacattttaagacaccgaaagagaaacaagtagtttgggatagagatcttttaga 566
Query: 580 gaaaaaaaaaaaaaaaa-----ccaaaaaacccacaatttgataactgaaaaaagaaaag 634
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaaaaaaaaaaaaaaaaaaaaaccaaaaaacccacaatttgataactgaaaaaagaaaag 506
Query: 635 tgagca 640
||||||
Sbjct: 505 tgagca 500
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1045
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1035
Effective search space: 652050
Effective search space used: 652050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
