Query= MSMg01no196_f20.b1 MSMg01no196_f20.b1 CHROMAT_FILE:
MSMg01no196_f20.b1 PHD_FILE: MSMg01no196_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:53 2005
(311 letters)
>mm_chr3_136966801_136967513
Length = 713
Score = 547 bits (283), Expect = e-160
Identities = 302/309 (97%), Gaps = 2/309 (0%)
Strand = Plus / Minus
Query: 5 gaattcattaagaagacagacacaaactaatttccaactcttgcctcatgataataaaaa 64
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 513 gaattcattaagaagacagacacaaactaatttccaactcttgccttatgataataaaaa 454
Query: 65 acacattctaacagggttttattgttagtttaatatcatttttattttgacatctgccga 124
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 acacattctaacagggtcttattgttagtttaatatcatttttattttgacatctgccga 394
Query: 125 aactgaggagcaataatccttgaatatattagcagttcaatggatattaacagttgtgta 184
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aactgaggagcaataatctttgaatatattagcagttcaatggatattaacagttgtgta 334
Query: 185 tgcttagaaccactgcaatcatcaataagcaaactctcctacaactgtaactagtgattt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tgcttagaaccactgcaatcatcaataagcaaactctcctacaactgtaactagtgattt 274
Query: 245 tcgcccctgtccag--gatagagcgcatcacctcagaccaacttaagtaatacattctat 302
|||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 273 tcgcccctgtccaggcgatagagcgcatgacctcagaccaatttaagtaatacattctat 214
Query: 303 accattgta 311
|||||||||
Sbjct: 213 accattgta 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 713
Length adjustment: 9
Effective length of query: 302
Effective length of database: 704
Effective search space: 212608
Effective search space used: 212608
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no196_f20.g1 MSMg01no196_f20.g1 CHROMAT_FILE:
MSMg01no196_f20.g1 PHD_FILE: MSMg01no196_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:15:53 2005
(527 letters)
>mm_chr3_136915658_136916583
Length = 926
Score = 959 bits (496), Expect = 0.0
Identities = 517/524 (98%), Gaps = 1/524 (0%)
Strand = Plus / Plus
Query: 1 cagtcctgacatcctttggtgatcaacagcaatgtggaaagtgtcagctgaataaatcct 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 cagtcctgacatcctttggtgatcaacagcaatgtggaaagtgtaagctgaataaatcct 260
Query: 61 ttccaccccaactgcttcttggtcatgatgtttgtgcaggaatagaaaccctgactaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttccaccccaactgcttcttggtcatgatgtttgtgcaggaatagaaaccctgactaaga 320
Query: 121 cagctatcaatattgaaatgtgtgaaatcagtgtcatataattgaagtgaagaaaggaac 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 cagctatcaatattgaaatgtgtgaaatcagtatcatataattgaagtgaagaaaggaac 380
Query: 181 tttacattgtataacttaagccaccttgaagaagaagttgttactcatcaatcaatcttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttacattgtataacttaagccaccttgaagaagaagttgttactcatcaatcaatcttc 440
Query: 241 actcagaagttagtgttgtcttttgatgcaatgcctgtgttccatcagaaactctccaat 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 actcagaagttagtgttgtcttttgaggcaatgcctgtgttccatcagaaactctccaat 500
Query: 301 gaatctttagaccctaccaaaaaattcatgactcatggctcactgcaggactctccttca 360
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 501 gaatctttagaccctaccaaaaaattcatgacacatggttcactgcaggactctccttca 560
Query: 361 cacttttctcagtgtttctttttttgtagtaaggcaatattagctcagccaaatttctgc 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 561 cacttttctcagtgtttctttttt-gtagtaaggcaatattagctcagccaaatttcagc 619
Query: 421 tgcattgatcttctttctgttcattaaacatggtaaaatttgttcatccagagacttaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgcattgatcttctttctgttcattaaacatggtaaaatttgttcatccagagacttaac 679
Query: 481 cttgttcctcccttgggatttcatggaaaggactcctcccatca 524
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cttgttcctcccttgggatttcatggaaaggactcctcccatca 723
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 926
Length adjustment: 10
Effective length of query: 517
Effective length of database: 916
Effective search space: 473572
Effective search space used: 473572
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
