BAC Information

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BAC

Clone NameMSMg01-196H23
Chromosome3 (Build37)
Map Location 86,885,656 - 87,038,668
singlet/doubletdoublet
Overlap geneKirrel1, LOC100042355
Upstream geneSh3d19, Rps3a, LOC634201, Lrba, Mab21l2, EG667024, LOC100042319, Dclk2, EG625055, Cd1d2, Cd1d1, LOC667897
Downstream geneMsr2, Cd5l, Fcrl1, Fcrl5, Etv3, EG546801, Arhgef11, EG625281, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-196H23.T7 (MSMg01no196_h23.b1)MSMg01-196H23.TJ (MSMg01no196_h23.g1)
ACCAG384589AG384590
length743747
length of high quality
(start - end)		675 (46 - 720)291 (73 - 363)
definitionCHROMAT_FILE: MSMg01no196_h23.b1 PHD_FILE: MSMg01no196_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:04 2005CHROMAT_FILE: MSMg01no196_h23.g1 PHD_FILE: MSMg01no196_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,038,325 - 87,038,668)(86,885,656 - 86,885,946)
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCAGACTGAAGGAAAAGATAAATACATCTAAACAGTAGAGGACA
GAAGAGATGATGATAGAACAGTAGTTTAAAAAAACGGAGTAAGAAAACAC
CAAGTCCTAGAGAATCAGTAAACTTGAAGGCATTGACACACATCTTCCAA
TAATACAGTCTCGATGCTCCCACGGGAAAACACAGAGACTAGTAGACCAG
AAACTGAATCCATCCATTTGCTACTTCCAAGAAATGCACCTCACAGTTAA
AGAGAGATGCTACATTGGAGAGAAAGGCCTAAAAGGTTATTCCAAGCAAG
TGAAACTAGAAAACAAATGTATCACTATGAAAACACCTGACACCTTCCCT
CTCTTTCCTTCCTTCCAATTCCAGTGCTCCAGTCTGATCCTCAGCCTATA
GCAACCTGTCTGCTGCAGCTTCACCTTCCTCTCTGACCCCATTCCCAGCA
GATCCCAGATTTCCAACAGCCTTCTTCCACCACATCAACCCATTGTCTCA
GCCACAACCTTTATAGATATTTCCTGGGAAACCTCCTGCTTAGGGAATCA
GGCCAGTGACTTTTACCCTTCCTTCTCTCCACCAGTTCTAACCTCTCAGT
CTTGCCCCCAGCTTTGTAACAGATGACCTGTTGTGTTCTCTTCTTCCTCA
TTGACCTCATTCCCAGGGCTTTTTAGACCCTGGTAGCACATCC

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTGCCGTTTGTGTTGTTCTACACTAAG
ATCTCCATCTAGGTCAGTAAGACGTTTCCTTCGCCACCATTTCCAGGCCC
CCATCCCCACATGTCCTCTCACTTGTCTCTCCTTGGATGCTAACATGGGA
CAAGCTCAAGCTCACAAGGTCCCTGCTCCCCACACAGGGACATCATCACA
AACCTGACACTCAAGGCACCGAAAATGGAAGAAGGAATCTGATTGGTCAG
GGGTGGGGGGGGCAGTGAGGAGGAGACAAAACCAAAATTTGTCTGGATAA
AGTATCTACCTTTTTATTTGCACCCCCCCCCCCTAGCTGTGATAGACAGG
GTAGGATAGCTGATTCCCACACTCAAAACACAAATAAACTCTTATCAGAA
TCCACCAGCAGGCAGGTCTCACCATTTGGATGTATATGCTAGATTCAAAG
TGCTTAGAGACTTGGACATAGTACTACAAGGACTTAGGAGTCTGGCACAG
GTCAGGTGACCCTCTCTTTTCCACGGCACCTGTGTAAAGTGGGTAAAACC
CTTCCAGCTTTTCTTTCCAACGAAGTTCTATTGTCTTCGACCCTAACCTC
TGTAAACACCAACCCCCTGATCTCTCCATCTTCTTCATAGCCTCCATACA
TTATATCCTTCATTTTTCTCTTCTCCTCTGACAAAACCTTCGACTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no196_h23.b1 MSMg01no196_h23.b1 CHROMAT_FILE:
MSMg01no196_h23.b1 PHD_FILE: MSMg01no196_h23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:04 2005
         (675 letters)



>mm_chr3_87038325_87039399
          Length = 1075

 Score =  665 bits (344), Expect = 0.0
 Identities = 344/344 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttcagactgaaggaaaagataaatacatctaaacagtagaggacagaagagat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ggaattcttcagactgaaggaaaagataaatacatctaaacagtagaggacagaagagat 285

                                                                       
Query: 64  gatgatagaacagtagtttaaaaaaacggagtaagaaaacaccaagtcctagagaatcag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 gatgatagaacagtagtttaaaaaaacggagtaagaaaacaccaagtcctagagaatcag 225

                                                                       
Query: 124 taaacttgaaggcattgacacacatcttccaataatacagtctcgatgctcccacgggaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 taaacttgaaggcattgacacacatcttccaataatacagtctcgatgctcccacgggaa 165

                                                                       
Query: 184 aacacagagactagtagaccagaaactgaatccatccatttgctacttccaagaaatgca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 aacacagagactagtagaccagaaactgaatccatccatttgctacttccaagaaatgca 105

                                                                       
Query: 244 cctcacagttaaagagagatgctacattggagagaaaggcctaaaaggttattccaagca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 cctcacagttaaagagagatgctacattggagagaaaggcctaaaaggttattccaagca 45

                                                       
Query: 304 agtgaaactagaaaacaaatgtatcactatgaaaacacctgaca 347
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44  agtgaaactagaaaacaaatgtatcactatgaaaacacctgaca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no196_h23.g1 MSMg01no196_h23.g1 CHROMAT_FILE:
MSMg01no196_h23.g1 PHD_FILE: MSMg01no196_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:04 2005
         (291 letters)



>mm_chr3_86885456_86886149
          Length = 694

 Score =  532 bits (275), Expect = e-155
 Identities = 286/291 (98%), Gaps = 3/291 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgccgtttgtgttgttctacactaagatctccatctaggtcagtaagacgtttccttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgccgtttgtgttgttctacactaagatctccatctaggtcagtaagacgtttccttc 260

                                                                       
Query: 61  gccaccatttccaggcccccatccccacatgtcctctcacttgtctctccttggatgcta 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 gccaccatttccaggcccccatcccctcatgtcctctcacttgtctctccttggatgcta 320

                                                                       
Query: 121 acatgggacaagctcaagctcacaaggtccctgctccccacacagggacatcatcacaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acatgggacaagctcaagctcacaaggtccctgctccccacacagggacatcatcacaaa 380

                                                                       
Query: 181 cctgacactcaaggcaccgaaaatggaagaaggaatctgattggtcaggggtgggg---g 237
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||   |
Sbjct: 381 cctgacactcaaggcactgaaaatggaagaaggaatctgattggtcaggggtggggtggg 440

                                                              
Query: 238 gggcagtgaggaggagacaaaaccaaaatttgtctggataaagtatctacc 288
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggcagtgaggaggagacaaaaccaaaatttgtctggataaagtatctacc 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 694
Length adjustment: 9
Effective length of query: 282
Effective length of database: 685
Effective search space:   193170
Effective search space used:   193170
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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