BAC Information

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BAC

Clone NameMSMg01-196I02
Chromosome3 (Build37)
Map Location 32,642,363 - 32,642,778
singlet/doubletsinglet
Overlap geneNdufb5
Upstream geneKcnmb2, LOC665514, Zmat3, 4930429B21Rik, Pik3ca, Kcnmb3, Zfp639, Mfn1, Gnb4, LOC100040977, Actl6a, Mrpl47
Downstream geneUsp13, Pex2, EG545512, LOC100041058
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-196I02.T7 (MSMg01no196_i02.b1)MSMg01-196I02.TJ (MSMg01no196_i02.g1)
ACCAG384595AG384596
length747731
length of high quality
(start - end)
224 (36 - 259)417 (77 - 493)
definitionCHROMAT_FILE: MSMg01no196_i02.b1 PHD_FILE: MSMg01no196_i02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:04 2005CHROMAT_FILE: MSMg01no196_i02.g1 PHD_FILE: MSMg01no196_i02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCATG
TACACTGCCTTTGCTGTGTAAACCTTGCTCCCCAATTTTAAATAAAAGTG
GCTACAGCCAATTACTGGGGAGAAGAGAGGTAGGCGGGGCTTTGGTTACT
GGGGTAGGGGCCACAGGTAGGGACCACGAGGAGAGTGAAAGGAGGAGGAA
GGGAGAGGAGAAGGAGAAACACTCCTCCATTGTTGGTGGGAGTGCAGGCT
TGTACAACCACTCTGGAAATCAGTCTGGTGGTTCCTCATATTACTGGACA
CAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCTGAA
GATGCCCCTACTGGTCTAGAAGGACTCATGTTTCCACTATGTTCATATTA
TTCCTCCCCCTTTTAGCCAGATACCGCGTTGATTTTCCATGTTCCCTCTT
TGACGATTGTTATCCGATCATCGTGTCCTTTCTCTCCATTGTTGCATTAC
TCTCTTTTCTATTTTCACTGATTTTACGTATCTCCCCTATCCTCTCCGTT
TGTCCCCCGCTTGGCTTCCCCCCTGAATTGCTGTCTCTCATCCCCTTCTC
CTTCCTCCCCCTTTTTCTTTTTTTCCTTGTTTCCGCGTTTTTTTTGCCCC
CCTTCCCTCTTTTTCCCTTATTATTTACTTCTCCTTCTCTTGTTCTCTCC
TATTGTCCTTCTTCTTACCACTTCTCCCCTTGCTCTGTCGGTCTCTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTCCTAAACCCTGTTAGCTGCT
ACAGGTGATTCCAAAATCCAGACAGCTCCCATCTTCAGCTGTGGATCGTT
GAACGTGGCAGGATTAGTGCAGGTGGAGCTGGCCTCTACATCCATGCAGT
AGCATCCTCGAATCCAGATAACTGTGGTTTGAAAATATTTGGGAAGTAAA
TTGCTCCTGTAACCTTTGTTCTTGGTATTATTCCCCTAACAATGCAATAT
AGTAGTGGTTTACATGGTATTCATTGTCACCAGTATTACCAGACATAGTA
TATAGGAGAACTTGTGGGCTATTGTAAGGGTGTGTTTCACTGAAGGTCTC
TGATCATCTGAAAGTTTTGGTGTCCAGGAACCCAGAACTCGTTCCTCATG
GATACTGACACCCAAGGATAGTTGTGCAGACCCATGGGTGTGCGGCATGT
TATAGGGAACGTGGCATCTGTTGCGACAGCGTCAGCTTCTGTCTGAAGGT
AGTGACGACTTGTATCCGTTATACTCAACCCATGCATCTTTCTTTCTTAT
GATATTGTTGCCACTTACCACTTTCTGCCCGCTTTGATTTTCCTTTCTCC
TATGATCCCTCTCTCCCCCTTCTCCCCTTCCACTCGTCATTTTCCCCTTT
CTCCTTTTCTTTTTCCCTTTCTTCCCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no196_i02.g1 MSMg01no196_i02.g1 CHROMAT_FILE:
MSMg01no196_i02.g1 PHD_FILE: MSMg01no196_i02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:04 2005
         (417 letters)



>mm_chr3_32642163_32642979
          Length = 817

 Score =  797 bits (412), Expect = 0.0
 Identities = 415/416 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttcctaaaccctgttagctgctacaggtgattccaaaatccagacagctcccatcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttcctaaaccctgttagctgctacaggtgattccaaaatccagacagctcccatcttc 260

                                                                       
Query: 61  agctgtggatcgttgaacgtggcaggattagtgcaggtggagctggcctctacatccatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctgtggatcgttgaacgtggcaggattagtgcaggtggagctggcctctacatccatg 320

                                                                       
Query: 121 cagtagcatcctcgaatccagataactgtggtttgaaaatatttgggaagtaaattgctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagtagcatcctcgaatccagataactgtggtttgaaaatatttgggaagtaaattgctc 380

                                                                       
Query: 181 ctgtaacctttgttcttggtattattcccctaacaatgcaatatagtagtggtttacatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtaacctttgttcttggtattattcccctaacaatgcaatatagtagtggtttacatg 440

                                                                       
Query: 241 gtattcattgtcaccagtattaccagacatagtatataggagaacttgtgggctattgta 300
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 gtattcattgtcaccagtattaccagacatagtacataggagaacttgtgggctattgta 500

                                                                       
Query: 301 agggtgtgtttcactgaaggtctctgatcatctgaaagttttggtgtccaggaacccaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agggtgtgtttcactgaaggtctctgatcatctgaaagttttggtgtccaggaacccaga 560

                                                                   
Query: 361 actcgttcctcatggatactgacacccaaggatagttgtgcagacccatgggtgtg 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 actcgttcctcatggatactgacacccaaggatagttgtgcagacccatgggtgtg 616


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)