BAC Information

Click to search

BAC

Clone NameMSMg01-196M10
Chromosome3 (Build37)
Map Location 131,681,549 - 131,682,017
singlet/doubletsinglet
Overlap genenone
Upstream geneLef1, 6720418B01Rik, Hadh, Cyp2u1, Sgms2, LOC100043443, Papss1, Olfr375-ps1
Downstream geneDkk2, LOC100039018, EG433653, LOC668857, Scye1, A630047E20Rik, LOC668858, Npnt, Gstcd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-196M10.T7 (MSMg01no196_m10.b1)MSMg01-196M10.TJ (MSMg01no196_m10.g1)
ACCAG384761AG384762
length745739
length of high quality
(start - end)
---470 (77 - 546)
definitionCHROMAT_FILE: MSMg01no196_m10.b1 PHD_FILE: MSMg01no196_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:26 2005CHROMAT_FILE: MSMg01no196_m10.g1 PHD_FILE: MSMg01no196_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTTATCTTGCGGTACTATCTGTGCGATAACATTGCTCTTGTTTT
GAGAATATTCTCGACCTCGCTCCCTCTATATAAGATGAAGAAATAAAACT
GAATCATTACCAATGTGCCTCCTGTGGTGATTAATTTAGTCTCTTTTATG
AGTTCTTGAAGCATTTGAATTTGTAGACGATAATATGTGTGTGTGTGTGT
CGTGTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAATCAT
TATTCGAACGTTTCCCTTTTTTTCGATGATTGTATTCATTCTTTTGGTGT
CCATTTTTCCTTTGTCGAAACTTTCTATACCCTGTACATCATTGTTCATA
TATTCCCTTGTTTTCCGCTTCCTCCTTCTTCTATTTTTTATTTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTTTAAAGAGACAATAGGATATA
AAAGACAATTGTGTGTTAGTTATCTCAGAGTTGCACTTGTCCATTGTATT
GTATATAAACAATACTGGCAGTGCAGCCACATAAGCCACAGGCTCAGAGG
TTGGCACAGAGTCCCAGATCTCCTAGCTGTCAGGCTTCATGTCTCGATCT
GTGCATTTACTGCTGGCTTGATTAAGCACTCACAGGTCATTAGCATATCA
TTTAGTCTATCTTCTTTGTTACTTTCCAAGCCTGTTGAGTCTATGGTAGA
TAACCCCCCACCCCCTGTTTTTAACTACTCTTCATTTCTCTTGAATAATT
TTTAGAAACCTTAAGTCCCATCAACTTGTATTTATTTTCATTAAAATTCA
CTTCTGTTTTTACATTCTTAATGAATTTCCCTTGTTTCACAAAAGCTACT
TGAGGCTGGATATGAGGCAGAACATATCCACTTATAGATGGTCACAGCAT
ATAAGCAAAAGGGCTTGGCTCCCCTCTCCCCTTGACAGGTATCTCCTGTC
AAGAGATTTGTTGGTATGTTCTATTGTCCCACTTCTCTATTTGAAAATAC
TAGGAATATAGTATCTCTACCGCCTTATCACACGTTTACCTCCTTACCAT
ACCCTTTTACTTCAATTTATATACCTTTATTGCCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no196_m10.g1 MSMg01no196_m10.g1 CHROMAT_FILE:
MSMg01no196_m10.g1 PHD_FILE: MSMg01no196_m10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:26 2005
         (470 letters)



>mm_chr3_131681349_131682217
          Length = 869

 Score =  862 bits (446), Expect = 0.0
 Identities = 464/470 (98%), Gaps = 1/470 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attttaaagagacaataggatataaaagacaattgtgtgttagttatctcagagttgcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 attttaaagagacaataggatataaaagacaattgtgtgttagttatgtcagagttgcac 260

                                                                       
Query: 61  ttgtccattgtattgtatataaacaatactggcagtgcagccacataagccacaggctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtccattgtattgtatataaacaatactggcagtgcagccacataagccacaggctca 320

                                                                       
Query: 121 gaggttggcacagagtcccagatctcctagctgtcaggcttcatgtctcgatctgtgcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaggttggcacagagtcccagatctcctagctgtcaggcttcatgtctcgatctgtgcat 380

                                                                       
Query: 181 ttactgctggcttgattaagcactcacaggtcattagcatatcatttagtctatcttctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttactgctggcttgattaagcactcacaggtcattagcatatcatttagtctatcttctt 440

                                                                       
Query: 241 tgttactttccaagcctgttgagtctatggtagataaccccccaccccctgtttttaact 300
           |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 441 tgttactttccaagcctgttgagtctatggtagacaaccccc-accccctgtttttaact 499

                                                                       
Query: 301 actcttcatttctcttgaataatttttagaaaccttaagtcccatcaacttgtatttatt 360
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 500 actcttcatttctcttgaatattttttagaaaccttaagtcccatcaacttgtatttatt 559

                                                                       
Query: 361 ttcattaaaattcacttctgtttttacattcttaatgaatttcccttgtttcacaaaagc 420
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 560 ttcattaaaattcacttctgtttttacattcttaatgaatttccctcgtttcacaaaagc 619

                                                             
Query: 421 tacttgaggctggatatgaggcagaacatatccacttatagatggtcaca 470
           |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 620 tacttgaggctggatatgaggcagaacatatccacttagagatggtcaca 669


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 869
Length adjustment: 10
Effective length of query: 460
Effective length of database: 859
Effective search space:   395140
Effective search space used:   395140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)