NNAAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCAAGGCCCATATCGAAACATGATAAAGGCAATCTACAGC
AAACCAGTAGCCAACATCAAAGTAAATGGTGAGAAGCTGGAAGCCATCCC
ACTAAAATTAGGGACTAGAAAAGGCTGCCAACTTTCTCCCTACCTGTTCA
ACATTGTACTTGAAGTCCTAGCCAGAACAATTTGATAACAAAAGGAGATC
ACAGGGATACAAATTTGAAAGGAAGAAGTCAAACTATCAATTTTTCCAGA
AGATATGATAGTATACATAAGTGACTCTAAAAATTCCAACAGAAAACTCC
TAAACCTGATAAACAGCTTCAGTGAAGTAGCTGGATATAAAATTAACTCA
AACTAGTCAATGGCTTTTCTCTAACCAAAGGATAAACAGGCTGAGAAAGA
TATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATATGAAATACC
TTGGCGTGATTCTAACTAAGGAAGTGAAAGATCTGTTTGATAAGAACTTC
ATGTCTCTGAAGAAAGAAATTACAGAAGATCTCAGAAGATGGAAAGATCT
TCCATGCTCATGGATTGGCAGGATTAATATAGTANAAATGGCTATCTTGC
CAAAAGCAATCTACAGATTTCATGCAATCCCCATCTAAATTCCCACTCAA
TTTTTACAAAAATTAGAAAGGGCAACCTGTCAATTCTTCTGTAATAACAA
AAAATCTAGGA

NNTTTCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTTCTCACAGTAGGAG
TCTGCCTTTATTTTCTGTTAAAAGACAGAAAACTCATTTTATGTTAGTTA
CTTTGACTCATTAAAGTTAACCTTTACATTTCAATCTTAGCCTCTATTTT
GGAGCAGCTAATAACTTATTCCCAGATTTAGGATGGCCCTGTTGATGGAT
TTGTTTGCCTTAAATAATTACTATCCTTTTAGAATGTATATTAACCTTGC
TGGAAGCTGAAGAAACTACACTGACCATGAAGTTATTACTCTTGTAGGAG
ATTGGGACAATGACTGAGTGACTAAAAGCACTGGCTACTCTTGCAAAGAA
CCCTTAACTAACTCCTTGCACTCACATAGCAGCTCACAACCATTTGTAAC
TTCAAGTCCAGAGGAGCTGATACCCTTTCCTATACTTGGTGAGCCTGGAC
AGCCACATAATGCACGGACAAAATACCAATATCAGTAAAATAATAATAAT
AATAATAATAATAATAATAATAATAATAACAACAACCACAACTATACCCT
CCATTATAGACACTAAAAAAATATATGACCTTATTAATTAAATTATACTT
CTCTAATCACAAAATGTCCCCGAGAATACGCTCTTACAAATTTTTAACGG
TCCCCCGATTACCATACCCCTTACCCCCCTTCTGTGTCTTTTACCTATGA
CTT

Query= MSMg01no196_o13.g1 MSMg01no196_o13.g1 CHROMAT_FILE:
MSMg01no196_o13.g1 PHD_FILE: MSMg01no196_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:36 2005
         (500 letters)



>mm_chr3_112680865_112681764
          Length = 900

 Score =  891 bits (461), Expect = 0.0
 Identities = 464/465 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttctcacagtaggagtctgcctttattttctgttaaaagacagaaaactcattttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 actttctcacagtaggagtctgcctttattttctgttaaaagacagaaaactcattttat 406

                                                                       
Query: 61  gttagttactttgactcattaaagttaacctttacatttcaatcttagcctctattttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gttagttactttgactcattaaagttaacctttacatttcaatcttagcctctattttgg 346

                                                                       
Query: 121 agcagctaataacttattcccagatttaggatggccctgttgatggatttgtttgcctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 345 agcagctaataacttattcccagatttaggatggccctgttgatggatttgtttgtctta 286

                                                                       
Query: 181 aataattactatccttttagaatgtatattaaccttgctggaagctgaagaaactacact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 aataattactatccttttagaatgtatattaaccttgctggaagctgaagaaactacact 226

                                                                       
Query: 241 gaccatgaagttattactcttgtaggagattgggacaatgactgagtgactaaaagcact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 gaccatgaagttattactcttgtaggagattgggacaatgactgagtgactaaaagcact 166

                                                                       
Query: 301 ggctactcttgcaaagaacccttaactaactccttgcactcacatagcagctcacaacca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 ggctactcttgcaaagaacccttaactaactccttgcactcacatagcagctcacaacca 106

                                                                       
Query: 361 tttgtaacttcaagtccagaggagctgataccctttcctatacttggtgagcctggacag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 tttgtaacttcaagtccagaggagctgataccctttcctatacttggtgagcctggacag 46

                                                        
Query: 421 ccacataatgcacggacaaaataccaatatcagtaaaataataat 465
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45  ccacataatgcacggacaaaataccaatatcagtaaaataataat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)