BAC Information

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BAC

Clone NameMSMg01-197D20
Chromosome3 (Build37)
Map Location 21,578,029 - 21,578,268
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665094, LOC100040325
Downstream gene7530428D23Rik, LOC100039465, LOC100040353, Tbl1xr1, LOC545506, LOC675593, LOC100040378
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197D20.T7 (MSMg01no197_d20.b1)MSMg01-197D20.TJ (MSMg01no197_d20.g1)
ACCAG385054AG385055
length737843
length of high quality
(start - end)
240 (429 - 668)183 (75 - 257)
definitionCHROMAT_FILE: MSMg01no197_d20.b1 PHD_FILE: MSMg01no197_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:03 2005CHROMAT_FILE: MSMg01no197_d20.g1 PHD_FILE: MSMg01no197_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCCTCTTATACTGTAAGCCACAGTAAACCATTCCTTCTTGTTTTG
GTTTTGTTTCCTGTTTCTGTGGTAAAATATTTTAACAAAAGCAATCCAAG
GGAGGAAAGAATTATTTTTATACACAACTCCAAGATATAGCCTATATTGC
TTGAGGTTAATTCATCAGGAGTTAGAAGCATACAATCACATTACTGCTCT
GGTCAGAAGACGAGAGTAATGAATTTTAACATGCTACTGAAACACGTTAC
TCAGTCTGTAGTTGAATTCTACTCATCAGTAAAAGTCTGACAATGAAGAT
CAACCATCAGTAGACTATGCCTGCTGCAGTGAAGCTGTTAGCATTCTCTT
GTAGAAGTAAGGCGCGCCTCACAAAACCCTCACCTAAGATTCTTGTCACC
ATTCCTTCCTGCTTTTACTCCCTTTGCATATAGTATGCAGAATGCTGACT
TTCTGGTTGTGCAGCTATCTGCCAGTCATCTCGAATCCTGTAATTAACCT
CCATAAATTGTTTGCCAATCTGACTTGAGAGAACCTTTCTTTTTATGAGT
CATCTCCTTCCATACTTTGGGTGAACCAAAATTTCTTTCCTGTCTCCACA
GGTAAGACATATGACACTGTCTACCATAAGGTTTGTTGACAATATGGAGC
AACTAGAACTCTCATACACTCACTGCTCGGCAGAATA
CAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAGTACTATATTGAATAGGCAGGGAG
AGAGTGGGCAGCCTTATCGAGTCCCTGATTTTAGTGGGATTGCTTCAACT
TTCTCTCCATAAAGTTTGATGTTGGCTACTGGTTTGCTGTGTATTGCTTT
AGTATATTTAGGTATGGGCCTTGCAGTCCTGATCTTCCCAAGATTTTTAT
CATGAAGGGGTGTTGGATTTTGACAAATGCTTTCTCAACATACAAAAAGA
TGACAATATGGTTTTATTTCTTTGATTTTTAATATAAAGAGCATTATGTA
GATGAATTTTTTTTTTTTTCACCCCCCCCCCACTATAATGTAATATAACC
TTATATAAATAATTTTTCTCACCCCACCAAAAAAAAAAAATTATAAAAAA
ATTACAACCCACATATTTACTAACATAAATAACAAAACTATACAACTTTA
ATTAATATAAAATAAACTTTACATCTAAAAAATTAATATTATCATTTATT
ATTAAATACTATTAATTAAATTTAAAAATATTTAATTACAAATATTATGA
TTTCATTATTTAATATACATCTATTATAACATACAACTAAATAATCTATA
CTATATAGAATATAAATTAAATATAGCAACCATTAACTTACTTATATAAA
AAATTGATAATATACTTCAAAAATATTATATATCTATTAAAAATTAATAT
CTTATCACAAATAAATTATAAACTATCATATAACATATTATAAAAATCAT
ATTGAATATATTATTTACATAATTTCATACTTTACAACAATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_d20.b1 MSMg01no197_d20.b1 CHROMAT_FILE:
MSMg01no197_d20.b1 PHD_FILE: MSMg01no197_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:03 2005
         (240 letters)



>mm_chr3_21577829_21578468
          Length = 640

 Score =  449 bits (232), Expect = e-131
 Identities = 238/240 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcacctaagattcttgtcaccattccttcctgcttttactccctttgcatatagtatgc 60
           ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 440 ctcacctaagattcttgtcaccatttctttctgcttttactccctttgcatatagtatgc 381

                                                                       
Query: 61  agaatgctgactttctggttgtgcagctatctgccagtcatctcgaatcctgtaattaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agaatgctgactttctggttgtgcagctatctgccagtcatctcgaatcctgtaattaac 321

                                                                       
Query: 121 ctccataaattgtttgccaatctgacttgagagaacctttctttttatgagtcatctcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctccataaattgtttgccaatctgacttgagagaacctttctttttatgagtcatctcct 261

                                                                       
Query: 181 tccatactttgggtgaaccaaaatttctttcctgtctccacaggtaagacatatgacact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tccatactttgggtgaaccaaaatttctttcctgtctccacaggtaagacatatgacact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)