Query= MSMg01no197_n02.b1 MSMg01no197_n02.b1 CHROMAT_FILE:
MSMg01no197_n02.b1 PHD_FILE: MSMg01no197_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:50 2005
(653 letters)
>mm_chr3_140329030_140330082
Length = 1053
Score = 1158 bits (599), Expect = 0.0
Identities = 608/611 (99%)
Strand = Plus / Minus
Query: 43 caagggccgctcctcccattgatgcccaacatggccatcctctgccacatacaggccaga 102
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1053 caagggccgctcctcccattgatgcccaacatggccatcctctgccacatacgggccaga 994
Query: 103 gccatgggtccatgcatgtgtactctttgattggtggtctagtccccaggaattctgggg 162
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 993 gccatgggtccatacatgtgtactctttgattggtggtccagtccccaggaattctgggg 934
Query: 163 gtctggccagttgacacagctaacagtttgggactacaaactcccctcagctcttgcagt 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933 gtctggccagttgacacagctaacagtttgggactacaaactcccctcagctcttgcagt 874
Query: 223 cccttctccaactcctccatgagctatcttaatgtccacacagaagaataaaaatctcct 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 cccttctccaactcctccatgagctatcttaatgtccacacagaagaataaaaatctcct 814
Query: 283 aggcactcagtagtaatgtgcacttataggtagaccatactgacatttaccaccatgcta 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 aggcactcagtagtaatgtgcacttataggtagaccatactgacatttaccaccatgcta 754
Query: 343 tataaaatgaaaaggaagggtaatttggcaagcaaggaagaaaggaaactctagatggga 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 tataaaatgaaaaggaagggtaatttggcaagcaaggaagaaaggaaactctagatggga 694
Query: 403 caagacttttctctatgtgctaaccctgaaacaactgggataactgtgctctttaatgag 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 caagacttttctctatgtgctaaccctgaaacaactgggataactgtgctctttaatgag 634
Query: 463 aagttgaatgagcactaaatgttggttaattttaatcatagaaacttaatcctagaaatt 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 aagttgaatgagcactaaatgttggttaattttaatcatagaaacttaatcctagaaatt 574
Query: 523 aagttagcattacaaggtaaaaaagtcatccaaattgttatcagtaacacgttccagccc 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 aagttagcattacaaggtaaaaaagtcatccaaattgttatcagtaacacgttccagccc 514
Query: 583 tcattattaatgatttccataaaaccctttcatgtgtgtgtcacaatggccagtctgtat 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tcattattaatgatttccataaaaccctttcatgtgtgtgtcacaatggccagtctgtat 454
Query: 643 tttctgaattc 653
|||||||||||
Sbjct: 453 tttctgaattc 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no197_n02.g1 MSMg01no197_n02.g1 CHROMAT_FILE:
MSMg01no197_n02.g1 PHD_FILE: MSMg01no197_n02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:50 2005
(472 letters)
>mm_chr3_140281872_140282745
Length = 874
Score = 839 bits (434), Expect = 0.0
Identities = 464/474 (97%), Gaps = 2/474 (0%)
Strand = Plus / Plus
Query: 1 tcataactccctccaccattgtcagaagtactgtgtacatcaatcactgttggctttatg 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 tcataactccctccaccattgtcagaagtactgtgtacatcaatcgctgttggctttatg 260
Query: 61 agtttgtcaagagaagaagggtagaagaagtaggcaattctagtgatctgaaaactcatt 120
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 261 agtttgtcaagagaagaagggtagaagaagtacgcaattctagtgatctcaaaactcatt 320
Query: 121 tatttttctatatctttatttttcaacataggctatcactattacttctacaagatcttg 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatttttctatatctttatgtttcaacataggctatcactattacttctacaagatcttg 380
Query: 181 ctgttccacattgcttttaaatttcacactaaatagaagaagcaagccattactcagtgt 240
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgttccacaatgtttttaaatttcacactaaatagaagaagcaagccattactcagtgt 440
Query: 241 aaagaatactttaatttcttttgaccactggtttctcataaattaagatttttataacag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagaatactttaatttcttttgaccactggtttctcataaattaagatttttataacag 500
Query: 301 catgaatctgactatgacagaacaatttgtaattatgtgactttcaattgtatctcttga 360
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 catgaatctgactatgacagaacaatttataattatgtgactttcaattgtatctcttga 560
Query: 361 tttaagggttactctgggggcaccttttctttttt-caaa-tattttctacaaaatgaac 418
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 561 tttaagggttactctgggggcaccttttctttttttcaaaatattttctacaaaatgaac 620
Query: 419 agttggagtgtatccttgaagtgagtaaatagggtcgcatttctttctatcggt 472
||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agttgtagtgtatccttgaagtgagtaaatagggtcgcatttctttctatcggt 674
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 874
Length adjustment: 10
Effective length of query: 462
Effective length of database: 864
Effective search space: 399168
Effective search space used: 399168
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
