BAC Information

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BAC

Clone NameMSMg01-198E10
Chromosome3 (Build37)
Map Location 105,063,855 - 105,064,164
singlet/doubletsinglet
Overlap genenone
Upstream geneEG433634, LOC668622, Lrig2, Slc16a1, EG624251, 7530404M11Rik, Ppm1j, Rhoc, Mov10, Capza1, St7l, LOC100043572, Wnt2b, Cttnbp2nl, 4930564D02Rik
Downstream gene1700095B22Rik, Kcnd3, Ddx20, 6530418L21Rik, Rap1a, EG433637, Adora3, I830077J02Rik, Atp5f1, Wdr77, Ovgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819, LOC100043129, Chia, Chi3l3, Chi3l4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-198E10.T7 (MSMg01no198_e10.b1)MSMg01-198E10.TJ (MSMg01no198_e10.g1)
ACCAG385676AG385677
length722725
length of high quality
(start - end)
317 (23 - 339)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no198_e10.b1 PHD_FILE: MSMg01no198_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:27 2005CHROMAT_FILE: MSMg01no198_e10.g1 PHD_FILE: MSMg01no198_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTCTCTATACGTCCTCT
TTCTTTATCTTTGCCTCAAATTTAGAAGTTTTTCATCTGAATATAAAGTC
CCAAACATTGACTCAGCACCTACTGAAAGCCAAGTACTGTAGAGACACCT
TAGAAAGCAAGCCCTCACTTTAATCACAAGCATTGCCAAAAAATAGGCAA
GCACATACAGCAAATTAGGCAACAATAAGTGCTTTGGAGGCACAAGGAAT
ATCACCCTCCAGTTCTGCCCCCCTATGTCACTTACCCTGTAGTCTAAAGC
ACCCCAGACACTGGCTGGAAGCAGTCTGCTATTTATATATTTCAGCCACC
CCCCGCTCTACTCCAAGATCCCAGTCCCTTGGCCACCACAACCCGGCCTT
TGCAGATTCTTGTGTGCACCAACGTCACATCTCTGACCTTGTCTGCTTCT
GGACATGGTTGTCTCCCACTCATCCCTCGGGCTCTAATCAAGTTAACCTT
CATTGAAAATGCCATCTCCTTAGAGAAGCCTTTCCTGATCCCTCAACCTA
GATTATTCTTTCTTAACTTGCACCCCTCAGCAACTTATCCTTTACATAAC
AAGCTACCTGTGGTAATTATTATTTAATATAAGACTCAAGTGGCCATTTA
ATATGTGTGTCTCCCACTACTTGAGAGTTCATGTAAGGAATATTTCTCTC
CCTCTCCCTCTCCCCATCCCCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCCCTTAAAAAGGCATAGACTAAC
AGACTGGATAGGACAAAACAGCAACCAACAGATTGGGAAAAGATCTTTAC
CAATCCTACATCCAATAGAGGGCTAATATCCAATATATACAAAGCACTCA
AGAAGTTAGACTGCAAAGAACAAAATAACCCTATTAAAAATGGGGAACAG
AGCTAAACAGATAATTCTCAACTGAGGAAACTTGAATGGCTGAGAAGCAC
CTAAAGAAATGTTGAACACTCTTATTCATCAGGGAAATGCAAATCAAAAC
CACCCTGAGATTCTACCTCACTTCCCGTACAACCGCCTAAGATCAAAAAC
TCAGGTGACAGCAGATGCTGGCCAGGATGTGAAAAAAGAGGAACACTCCT
CCATTGCTGGTGGGATTGCAAGCTGGTACAACCACTCTGGAAATCAGTCT
GGCGGTTCCTCAGAAAACTGGACATAGTACTACTGGAGGATCCAGCAATT
CCTCTCCTGGGCATATATCCAGAAGATGTTCCAACTTGTAATAAGGACAC
ATGCTCCACTATGTTCACAGCAGTCTTATTTATAATAACCAGAAGCTGGA
AAGAACCCAGATGTCCCTCCACAGAGGAATGGATGCAGAAAATATGGTAC
ACTTACACAGTGGAGTACTACTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no198_e10.b1 MSMg01no198_e10.b1 CHROMAT_FILE:
MSMg01no198_e10.b1 PHD_FILE: MSMg01no198_e10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:27 2005
         (317 letters)



>mm_chr3_105063652_105064368
          Length = 717

 Score =  561 bits (290), Expect = e-164
 Identities = 305/310 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcattctctatacgtcctctttctttatctttgcctcaaatttagaagtttttca 63
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 204 ggaattcattctctatacgtcctctttctttatctttgcttcaaatttagaagtttttca 263

                                                                       
Query: 64  tctgaatataaagtcccaaacattgactcagcacctactgaaagccaagtactgtagaga 123
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tctgaatataaagtcacaaacattgactcagcacctactgaaagccaagtactgtagaga 323

                                                                       
Query: 124 caccttagaaagcaagccctcactttaatcacaagcattgccaaaaaataggcaagcaca 183
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 324 caccttagaaagcaagccctcactttaatcacaagcattgccaactaataggcaagcaca 383

                                                                       
Query: 184 tacagcaaattaggcaacaataagtgctttggaggcacaaggaatatcaccctccagttc 243
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgcagcaaattaggcaacaataagtgctttggaggcacaaggaatatcaccctccagttc 443

                                                                       
Query: 244 tgcccccctatgtcacttaccctgtagtctaaagcaccccagacactggctggaagcagt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgcccccctatgtcacttaccctgtagtctaaagcaccccagacactggctggaagcagt 503

                     
Query: 304 ctgctattta 313
           ||||||||||
Sbjct: 504 ctgctattta 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)