BAC Information

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BAC

Clone NameMSMg01-198L23
Chromosome3 (Build37)
Map Location 110,522,168 - 110,522,512
singlet/doubletsinglet
Overlap genenone
Upstream geneNtng1, LOC100043181, LOC100043183, Prmt6
Downstream geneLOC100043190, LOC668712
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-198L23.T7 (MSMg01no198_l23.b1)MSMg01-198L23.TJ (MSMg01no198_l23.g1)
ACCAG385947AG385948
length726736
length of high quality
(start - end)		345 (382 - 726)513 (77 - 589)
definitionCHROMAT_FILE: MSMg01no198_l23.b1 PHD_FILE: MSMg01no198_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:04 2005CHROMAT_FILE: MSMg01no198_l23.g1 PHD_FILE: MSMg01no198_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTAGAGCAACATTTAGCTGCTTAAATTAGAAATTTGTAAATAACC
CTCTCTAGCCCCCAACATCCATTTAATCCAAAAATTCTAAAACTTTTAGT
CCTATGGACTTCACAAATCTGAACCAATTTATCTATACCATCCCACCTTC
TCTATACTTGAGAGGTACCAAATAATTTACAAACTGCACCTTTCTTTAAA
TCAGGCCACTGAAAGGCGACCTGAAAAAATACATGAACAACAAAGAAATG
TTGCAAAAATTTTTTTACTCAGGTACAGAATAAAATTCATAGTTAATGTG
TTTCATTTGCTTACAGTAAAAATGCACCCTAATATGTCTTATTTTGTGTA
AACAGTGGATCTATGGGATAGATATGTACTGTCTCGCACTATATAAAATT
AAACTGAGGCCCATTGTATTTAAATACATTTTCATCAGTCAAGTTCTCTG
GTTCTTGGTGGTTGGTCCCTACTGAGAAGGGATCAAGATATCCCATCATT
AGATGGAGAATAGCACTCTCAACAGAAGTTCTGCCCCTCTGTCTCGTGTC
CCTTCAAAGAGCCCAGCTATCTTCTGTATTTTAGCTACTTTCTCTTACAA
TTGCAAGGGAATGCCTTGTATGTCCTAATTTGCATCTCTCTGTCTCTGTC
TCTGTCTCTGCCTCTGTCTCTGCCTC

TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGATTTTTCCAAGACTTTTAACAT
GAAGGGTTGCTGGATTTTCTCAAATGCTTTTCAGCATCTAATGAAATGAT
CTTGTGTTTCCCCCACCCCCTTTGGGTTTGTTTATTTAGTGGTTTACATT
GATGGATTCCCATGTATTAAACCATCCCTGCATTCCTAGGATGAAGCCTA
CTTGATCCTGGTGAATGATAATTTTGATGTGTTCATGGATTCAATTGGCA
AGAACCTTATTGAATATTTTTGCATCAATGTTCATAATGGAGATTGGTCG
GTCTGTAGTTCTCTTTCTTTGTCGGCCCTTGCTGTGGTTTAGTTATAAGC
TTCATGGAACGAATTGGGCACTTTTCCTTCTTTTTCTATCTTGGGGAACA
GTTTGAATATTGGTATTAGATCTTCTTTAAAGGTCTGATAGAATTCTCCA
CTAAACCCATCTGGACCTGAGCTCTTTTTTTTTTTCTTGGTTGGAAGACT
ATTAATGACCGCTTCTATTTCTTCATGGGTTATTGGGCTGTTTAGACCAT
TTATCTGACACTGCTTTAACTTTGTCCCCTGCTATGTGTCTAGAAAATTG
CCCATTTCATCCAGATTTTTCCATTTAAAAAAGTAAAAACTTTTTGATCA
CGAACTGTTAAATTTTCGGATTCCCCAATTTCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no198_l23.b1 MSMg01no198_l23.b1 CHROMAT_FILE:
MSMg01no198_l23.b1 PHD_FILE: MSMg01no198_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:04 2005
         (345 letters)



>mm_chr3_110521968_110522712
          Length = 745

 Score =  629 bits (325), Expect = 0.0
 Identities = 340/345 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatgtcttattttgtgtaaacagtggatctatgggatagatatgtactgtctcgcacta 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 atatgtcttattttgtgtaaacagtggatttatgggatagatatgtactgtctcgcacta 260

                                                                       
Query: 61  tataaaattaaactgaggcccattgtatttaaatacattttcatcagtcaagttctctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tataaaattaaactgaggcccattgtatttaaatacattttcatcagtcaagttctctgg 320

                                                                       
Query: 121 ttcttggtggttggtccctactgagaagggatcaagatatcccatcattagatggagaat 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 ttcttggtggttggtccctactgagaagggatcaagatatcccatctttagatggagaat 380

                                                                       
Query: 181 agcactctcaacagaagttctgcccctctgtctcgtgtcccttcaaagagcccagctatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcactctcaacagaagttctgcccctctgtctcgtgtcccttcaaagagcccagctatc 440

                                                                       
Query: 241 ttctgtattttagctactttctcttacaattgcaagggaatgccttgtatgtcctaattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctgtattttagctactttctcttacaattgcaagggaatgccttgtatgtcctaattt 500

                                                        
Query: 301 gcatctctctgtctctgtctctgtctctgcctctgtctctgcctc 345
           ||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct: 501 gcatctctctgtctctgcctctgcctctgcctctgcctctgcctc 545


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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