CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACAGGTAGAGAGGTGACTCACAGGTGTTTGCTCTAAATACAGCCAA
GCTCTGTGTGGATGACCGATGGCTTCTGGAGAGGCAGGCAGATGCTTTGA
TGCTCTCTTCTGGGATGTAAATAACGCACCATAATGATGGCTCATCACAA
CAGTATCTGAGTGAACTATAACCAGGCATTTCATCTATGTTTATTAAACA
CTAAACAGTGCACTTCTGGATTCAGGGAGTTCTTCTTAGTCTATTTCAGG
TTGTGTCCTCAAAAGAGGAGGATGCACAAAAACTAACAAACAAACAAACA
AACAAACAAAATTTTACCACAATGACCCTCAGATGTAGAACCTCTCTTTA
GAATAGAATAGTTATAATTCATTTAATTTTTCTTTCTTTTTAAAAATATT
TTTATTAGGTATTTTCCTCATTTACATTTCCAATGCTATCCCCAAAGTCC
CCCATACCCTTCCCCCCACTCCCCTACCCACCCACTCCCACTTTTCGGCC
CTGGCGCTCCCCTGTACTGTGGCATATAAAGTTTGCAAGTCCAATGGGCC
TCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATGCATATGTAGCT
AGAGTCAAGAGCTCCAGGGTACTGGGTAGTTTCAAATGCTGTTCCACCTA
TAGGGTTGCAGATCCCTTTAACTCCTTGTTTACGTTCTCTAGCTACTC

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCACATTAAGGAAGAGCTATATGCAGG
TACTACAGTTTTTAATTCATAGAACCAGAAAAAAAGAGAAAGACAGACAG
ACACTGAGGACTAAGGAAAGGGAAATATAACTCTGTCATCTTGACATATT
TTCCTTAAAATTCACTTGAAGATTATCAAATACTCTGTAAAATAATCAAA
GGAGTTAAACCCAGGAGTGAATATTTATAGCTTTTCAAACCTTTTGAGTT
CTGATATCTGCTGTAAACCTTAGAATCTTTGATACACACACGAAAAATAT
TTTCCTTGTATTAAAATATATATTACTATTTCCAGGATGGGGTTCATGGT
GACCATAATTATTGTTTCAAGGCAATAAACAGATGCTGTTACAGAAGAAC
TGGGGAAAATGGTTGACTGCGAAGCACTGGATAGTTGTGGGTAACTGAGG
TCAAGGCTGGCCATTACCAAAATATAACTGAAGTCATGAGGAACACGTCT
ACATGCCAAGTATTTCCAAAAAGCACTGTTCCAGAATAGTGCCAGCTTCA
GGGCTTCTTATTTTAAATTGAAATAATATATCTGACCTAGTTTAAAGTAC
AGAACTTACACTCAAGTAGGCTAAAGGCAGTCTTGTCACCTGCCTCGTTG
ACACAACTGAGCAGATACTCCTG

Query= MSMg01no198_o07.b1 MSMg01no198_o07.b1 CHROMAT_FILE:
MSMg01no198_o07.b1 PHD_FILE: MSMg01no198_o07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:16 2005
         (316 letters)



>mm_chr3_110335158_110335873
          Length = 716

 Score =  576 bits (298), Expect = e-169
 Identities = 304/306 (99%)
 Strand = Plus / Plus

                                                                       
Query: 8   ttcacaggtagagaggtgactcacaggtgtttgctctaaatacagccaagctctgtgtgg 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttcacaggtagagaggtgactcacaggtgtttgctctaaatacagccaagctctgtgtgg 267

                                                                       
Query: 68  atgaccgatggcttctggagaggcaggcagatgctttgatgctctcttctgggatgtaaa 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 atgaccgatggcttctggagaggcaggcagatgctttgatgctctcttctgggatgtaaa 327

                                                                       
Query: 128 taacgcaccataatgatggctcatcacaacagtatctgagtgaactataaccaggcattt 187
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 328 taacgcaccataatgatggctcatcacaacagtatctgagtgagctataaccaggcattt 387

                                                                       
Query: 188 catctatgtttattaaacactaaacagtgcacttctggattcagggagttcttcttagtc 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 catctatgtttattaaacactaaacagtgcacttctggattcagggagttcttcttagtc 447

                                                                       
Query: 248 tatttcaggttgtgtcctcaaaagaggaggatgcacaaaaactaacaaacaaacaaacaa 307
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 448 tatttcaggttgtgtcctcaaaagaggaggatgcacaaaaacgaacaaacaaacaaacaa 507

                 
Query: 308 acaaac 313
           ||||||
Sbjct: 508 acaaac 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no198_o07.g1 MSMg01no198_o07.g1 CHROMAT_FILE:
MSMg01no198_o07.g1 PHD_FILE: MSMg01no198_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:16 2005
         (649 letters)



>mm_chr3_110366224_110367272
          Length = 1049

 Score = 1185 bits (613), Expect = 0.0
 Identities = 640/649 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacattaaggaagagctatatgcaggtactacagtttttaattcatagaaccagaaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 849 cacattaaggaagagctatatgcaggtactacagtttttaattcatagaaaaagaaaaaa 790

                                                                       
Query: 61  agagaaagacagacagacactgaggactaaggaaagggaaatataactctgtcatcttga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 agagaaagacagacagacactgaggactaaggaaagggaaatataactctgtcatcttga 730

                                                                       
Query: 121 catattttccttaaaattcacttgaagattatcaaatactctgtaaaataatcaaaggag 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 729 catattttccttaaaattcacttgaagcttatcaaatactctgtaaaataatcaaaggag 670

                                                                       
Query: 181 ttaaacccaggagtgaatatttatagcttttcaaaccttttgagttctgatatctgctgt 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ttaaacccaggagtgaatatctatagcttttcaaaccttttgagttctgatatctgctgt 610

                                                                       
Query: 241 aaaccttagaatctttgatacacacacgaaaaatattttccttgtattaaaatatatatt 300
           |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 609 aaaccttaaaatctttgatacatacacgaaaaatattttccttgtattaaaatatatatt 550

                                                                       
Query: 301 actatttccaggatggggttcatggtgaccataattattgtttcaaggcaataaacagat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 actatttccaggatggggttcatggtgaccataattattgtttcaaggcaataaacagat 490

                                                                       
Query: 361 gctgttacagaagaactggggaaaatggttgactgcgaagcactggatagttgtgggtaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gctgttacagaagaactggggaaaatggttgactgcgaagcactggatagttgtgggtaa 430

                                                                       
Query: 421 ctgaggtcaaggctggccattaccaaaatataactgaagtcatgaggaacacgtctacat 480
           |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 429 ctgaggtcaaggctggccattaccaaaatataacagaagtcatgaggaacacatctacat 370

                                                                       
Query: 481 gccaagtatttccaaaaagcactgttccagaatagtgccagcttcagggcttcttatttt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gccaagtatttccaaaaagcactgttccagaatagtgccagcttcagggcttcttatttt 310

                                                                       
Query: 541 aaattgaaataatatatctgacctagtttaaagtacagaacttacactcaagtaggctaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 aaattgaaataatatatctgacctagtttaaagtacagaacttacactcaagtaggctaa 250

                                                            
Query: 601 aggcagtcttgtcacctgcctcgttgacacaactgagcagatactcctg 649
           ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 249 aggcagtcttgtcacctgcctcgttgacacaactgagcagatattcctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)