BAC Information

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BAC

Clone NameMSMg01-198P09
Chromosome3 (Build37)
Map Location 75,804,078 - 75,804,391
singlet/doubletsinglet
Overlap genenone
Upstream geneBC050789, Serpini2, Wdr49, Pdcd10, Serpini1, Golph4
Downstream geneFstl5, LOC100041625, LOC100041635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-198P09.T7 (MSMg01no198_p09.b1)MSMg01-198P09.TJ (MSMg01no198_p09.g1)
ACCAG386076AG386077
length756736
length of high quality
(start - end)
317 (45 - 361)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no198_p09.b1 PHD_FILE: MSMg01no198_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:21 2005CHROMAT_FILE: MSMg01no198_p09.g1 PHD_FILE: MSMg01no198_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTATATAAGGCAGTCATCCACTGAGATACATACCAGAGCTTATTAT
GTCAAAGTGACACTGTAGAAGTCTCGTACATTGATTCTTAACTCATTGGT
TTTTTCAAAGTCTGCAAATAGACTTCTTTCCCTCTGACACAATTGTGTTC
ACATGCTACAAGAAATTGTGGCTTATTATTCTGAATATATTTGTGCTAAG
TTTTCACGTTTTTATTGTTTACTGTGCTGGCTAGATTTATGTCAACTTAA
CACAAGCTCGAATCATTTGGAGAGAGGGATTCTCAGTTGAGTAAATACCT
TTCATAAGATTGGTTTGTTTCTCACCCCGCGCTGCACTTTTAAAATTAGT
GATTGATATAGAAGGACCCAACCCATTTAGAAAGAAGCCATTCTGGTTTG
ATGGTACTGGGAGCTATTAGAAAGCAGGTTGAGCAAAGCAGTAAGCGGTA
CTACTTCATGCCCTCTGGATCACTTCCTGCCTCTGGGTTCCAGGCTTGAG
CTCCTCCCACGACGTCCCCAGATACTGGAAAATAAGCTGCAAGATGAAAT
AAACCTTTCCCCAGTTCCTGAGTTGCTTTTGGCAGTGGTATGGAATCCCA
GCAATAAAAACTTCAGCTCAGAGACTTCCCTCCTCTTTTGGTGTAAACTA
ACAAACTTAGTCTCACATTTCTGGGAGTGGGAATTGGTACTATAGACCTC
TACCCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGGGCATATACCCCGAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAT
GTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGATAAG
TGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATACAATTTCC
TAAACACATGAAACTCAAGAAAAATGAAGACTGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no198_p09.b1 MSMg01no198_p09.b1 CHROMAT_FILE:
MSMg01no198_p09.b1 PHD_FILE: MSMg01no198_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:21 2005
         (317 letters)



>mm_chr3_75803874_75804591
          Length = 718

 Score =  561 bits (290), Expect = e-164
 Identities = 308/314 (98%), Gaps = 1/314 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttatataaggcagtcatccactgagatacataccagagcttattatgtcaaagt 64
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttatgtaaggcagtcatccactgagatacataccagagcttattatgtcaaagt 264

                                                                       
Query: 65  gacactgtagaagtctcgtacattgattcttaactcattggtttttt-caaagtctgcaa 123
           |||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 265 gacaatgtagaagtcttgtacattgattcttaactcattggtttttttcaaagtctgcaa 324

                                                                       
Query: 124 atagacttctttccctctgacacaattgtgttcacatgctacaagaaattgtggcttatt 183
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atagacttctttccctttgacacaattgtgttcacatgctacaagaaattgtggcttatt 384

                                                                       
Query: 184 attctgaatatatttgtgctaagttttcacgtttttattgtttactgtgctggctagatt 243
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 385 attctgaatatatttgtgctaagttttcaagtttttattgtttactgtgctggctagatt 444

                                                                       
Query: 244 tatgtcaacttaacacaagctcgaatcatttggagagagggattctcagttgagtaaata 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tatgtcaacttaacacaagctcgaatcatttggagagagggattctcagttgagtaaata 504

                         
Query: 304 cctttcataagatt 317
           ||||||||||||||
Sbjct: 505 cctttcataagatt 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 718
Length adjustment: 9
Effective length of query: 308
Effective length of database: 709
Effective search space:   218372
Effective search space used:   218372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)