BAC Information

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BAC

Clone NameMSMg01-199A09
Chromosome3 (Build37)
Map Location 12,732,310 - 12,732,622
singlet/doubletsinglet
Overlap genenone
Upstream geneEG621965, LOC100039798
Downstream geneEG668033, LOC668037, LOC100039823, LOC100039861, 0710005M24Rik, LOC100041679, LOC100041667
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-199A09.T7 (MSMg01no199_a09.b1)MSMg01-199A09.TJ (MSMg01no199_a09.g1)
ACCAG386120AG386121
length708737
length of high quality
(start - end)		328 (49 - 376)421 (84 - 504)
definitionCHROMAT_FILE: MSMg01no199_a09.b1 PHD_FILE: MSMg01no199_a09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:26 2005CHROMAT_FILE: MSMg01no199_a09.g1 PHD_FILE: MSMg01no199_a09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACTCTTGCACCTGTGTGCAAGGCTTGTTTACTAGTTAGGCAC
AGTGGAGGCCCGCGCCATCATATAATGGTGATTGCTCGCGGCACACACGG
CTCTCCTCAAAGATTACTGGCAGCACACATGCGATTGCTCGCAGCACGTA
CCGGCTTTCCACAAGAATGAATTTATGAAATTCCTAGGCAAATGGATGGA
TCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAGGAACTCGC
ACAATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTAGGATAC
CCAAGATATAAGATACAATTTGCTAAACGCATGACACTCAAGAACAACGA
AGACCAAAGTGTGGACACTTTGCACCTTCTTAGAAATGGGAACAAAACAC
CCATGGAAGGAGTTACAGAGACAAAATTTGAAGCTGTGACGAAATGATGG
ACCATCTAGTGATTGCCATATCCAGGGATCCATCCCATAATCAGCCTCCA
AACCCTGACACCATTGCATACACTAGCAAGATTTTGCTGATAGAACCCAG
ATATAGATGTCTCTTGTGAGACTATGCTGGGGCCTAGCAAACACAGAAGT
TGATGATCACAGTCAGCTATTGGATGGGCACACGGCCCCCAATGTAAGAG
CTAGAGAA

NNNNCCCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTTCTGAAACTTTTTT
CCCCAAGTGTGTGGAGCGGGCGAGATATTTTAAATGGCTGCTTGTGTTTA
TAGGTTTATTTAAATTGTTTATTTGATCATTATTTAACTTTAATTAGAGA
ATTTATAAAGAAATTCGTACATTTATTTTAGATTTTCCAATTTTATGAAG
TAAAGGATTTTGAAGAACGTTTCTTTGGATTTATTTGATGTTTGTCATTA
TGTCCCCATTTTCATTTCTGATTTTGCTAATTTGAATATTTTTTCTCTGC
CTTTTAGTTAGTTTGATCAGTATATTATAATTTTGTGTATCAGACTCAAG
TGTTATAGGTACAATAAAAATACCCAACTTATAAAACAAACAAAGTTTGG
CTGAGTTTCTGTAGAATACAAATTAAATATATTTAATGTTTTTTTTGCTA
TATATTTACATTATATTATATATGAGAAGCTCAGGACAGAACTTCCCATT
TATTCAGGTTAAATGCCCAATATGCTTCTGCTTCTCATTACCCCTATTTG
CATCAGTGTGCAATTTACATCTCTCCGACTATCTCTGACCGCCGTTTTTG
TCCCGCGTTTGCGTATGTTACCCCTATTCATTGACCCCCCTACCCCTCCC
TTATACCCTTTTTTCCTACCCTTTTTCATATCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no199_a09.g1 MSMg01no199_a09.g1 CHROMAT_FILE:
MSMg01no199_a09.g1 PHD_FILE: MSMg01no199_a09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:26 2005
         (421 letters)



>mm_chr3_12731802_12732622
          Length = 821

 Score =  561 bits (290), Expect = e-164
 Identities = 308/316 (97%), Gaps = 6/316 (1%)
 Strand = Plus / Minus

                                                                       
Query: 109 aattagagaatttataaagaaattcgtacatttattttagattttccaattttatgaagt 168
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 aattagagaatttataaagaaattcgtacatttattttagattttccaattttatgaagt 762

                                                                       
Query: 169 aaaggattttgaagaacgtttctttggatttatttgatgtttgtcattatgtccccattt 228
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 761 aaaggattttgaagaacgtttctttggatttatttgatgtttgtcattatgtcccccttt 702

                                                                       
Query: 229 tcatttctgattttgctaatttgaatattttttctctgccttttagttagtttgatcagt 288
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 701 tcatttctgattttgctaatttgaatattctttctctgccttttagttagtttgatcagt 642

                                                                       
Query: 289 atattataattttgtgtatcagactcaagtgttataggtacaataaaaata--cccaact 346
           |||||||||||||||||||||||||||||||||||||||||||||||||||     ||||
Sbjct: 641 atattataattttgtgtatcagactcaagtgttataggtacaataaaaatatt---aact 585

                                                                       
Query: 347 tataaaacaaacaaagtttggctgagtttctgtagaatacaaattaaatatatttaat-g 405
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 584 tataaaacaaacaaagtttggctgagtttctgtagaatacaaattaaatatatttaatgg 525

                           
Query: 406 ttttttttgctatata 421
           ||||||||||||||||
Sbjct: 524 ttttttttgctatata 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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