BAC Information

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BAC

Clone NameMSMg01-199C23
Chromosome3 (Build37)
Map Location 122,851,098 - 123,012,068
singlet/doubletdoublet
Overlap geneSynpo2, Sec24d
Upstream geneAbca4, EG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726, Bcar3, Fnbp1l, Ppia-ps3_2252.1, Pde5a, LOC668792, Fabp2, 1810037I17Rik, Usp53, Myoz2
Downstream geneG430022H21Rik, Prss12, EG668804, Ndst3, LOC100043333, EG668809
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-199C23.T7 (MSMg01no199_c23.b1)MSMg01-199C23.TJ (MSMg01no199_c23.g1)
ACCAG386221AG386222
length726763
length of high quality
(start - end)		325 (48 - 372)642 (76 - 717)
definitionCHROMAT_FILE: MSMg01no199_c23.b1 PHD_FILE: MSMg01no199_c23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:39 2005CHROMAT_FILE: MSMg01no199_c23.g1 PHD_FILE: MSMg01no199_c23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,011,748 - 123,012,068)(122,851,098 - 122,851,739)
sequence
TCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACATACTTATATGTATATTTTAGAAGTATGTATATTGTATGTG
TAAAAGGAATCTCAAAAAAATAAAATAGGTAAGAGCTGTCTGAAAAGCGG
TGGTGGGACGGCAGCAAGGGAAGCGAAGAGGCTCCTTCCCTGTGACCACT
CATTCACACTTTATAATTCAAATGTCATCATCTCAGCTACGTGAAGAATA
ATGCTGCATAGTGTCCTAAGGTGAGGACAAACATCAAGTGTACCCATGTT
TGTCCCTAGAGAAAAGAGGAGGAGCAACGAATGGGTTTCAGGAAAGTGGA
AATTACATATACCTAGGATGTGTTCATTCCCCTCCCATCACAATATAACA
AATATTAATAATTATTAATGACGTGCATATGAGCAGCATAATAGTCAGTG
TACAATTTTAAAATTAAATTAAATTTTGCTCAAATCAAAAACCTTGAAAT
AAAGACTACCTCATAGAGTCTACCACATACTCATCCTGATTGCTAGCATT
AAAACAAAGACATCACTGACCCTCGGGCAGCCCCTGGCAATGTTAATGCA
AGGTGAGCAAAAGGATCGGTCAGTGAGCTTCTTTTAATCCACTGAGTATC
ACCTCGGGAGGCTGAGGTGTATTCGTGGATGTTAGCTTAAGAAAATGAGC
GTCTGGTCACGGAGAGAGTTGTACAA

CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCATCTGCTTACAAGTTTGTTTC
AGCTTTGAAGGGAGAGATCACAGGTATTATTCATTTTTCATTTGTAGCAT
TAAGCATCGGTACCCCTCACGCCAAATTTAACATCTAAATTAGATACAGG
AGTGAATAATAAATGAGTTAATGAGATAAAGAGTTGTGGTAAGTTTCCTG
AAGGACAGGGAACTTTGCAGCGCCAAAGCTCATTTTCAGGAACTGTTGGT
GACGAGCAGGCAATCCCTGGGAAATATCTGTTTATGGCCCCACCTGAGTA
CACTTTGGGACTCCTCCACAAAGTCTCTGACATTTTGTCCACCAGATCTC
CAGTCTCTGTTACAAGATCCCCAAATACTGGGAGGATCTGACTCGTATCT
TTCTCAGAGGATATTTCTATCTTGGGCCATCAGTGCCAGGATACAGGCCT
CTATGTCATTCTCCTTCATGACTTGGAACATCAGCTCCTTCCTTTTCCTG
CAGCTGAGGTCACTGCTAGCAGTGGCTGACACTCAATCAACAAGGTGAAC
CCTCGATTGACAGATTGATGACCAAGCTGGCCTGGAACTCACAGAGATCC
ACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAATGTGTTCACCACCATGC
CTGACATCATAAGTTAATTTTAGTCATAGTTTGACTCTCTGGCTCCTGCT
TGCCAAAAGTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no199_c23.b1 MSMg01no199_c23.b1 CHROMAT_FILE:
MSMg01no199_c23.b1 PHD_FILE: MSMg01no199_c23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:39 2005
         (325 letters)



>mm_chr3_123011544_123012268
          Length = 725

 Score =  621 bits (321), Expect = 0.0
 Identities = 321/321 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacatacttatatgtatattttagaagtatgtatattgtatgtgtaaaaggaatc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 gaattcacatacttatatgtatattttagaagtatgtatattgtatgtgtaaaaggaatc 466

                                                                       
Query: 65  tcaaaaaaataaaataggtaagagctgtctgaaaagcggtggtgggacggcagcaaggga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tcaaaaaaataaaataggtaagagctgtctgaaaagcggtggtgggacggcagcaaggga 406

                                                                       
Query: 125 agcgaagaggctccttccctgtgaccactcattcacactttataattcaaatgtcatcat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 agcgaagaggctccttccctgtgaccactcattcacactttataattcaaatgtcatcat 346

                                                                       
Query: 185 ctcagctacgtgaagaataatgctgcatagtgtcctaaggtgaggacaaacatcaagtgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ctcagctacgtgaagaataatgctgcatagtgtcctaaggtgaggacaaacatcaagtgt 286

                                                                       
Query: 245 acccatgtttgtccctagagaaaagaggaggagcaacgaatgggtttcaggaaagtggaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 acccatgtttgtccctagagaaaagaggaggagcaacgaatgggtttcaggaaagtggaa 226

                                
Query: 305 attacatatacctaggatgtg 325
           |||||||||||||||||||||
Sbjct: 225 attacatatacctaggatgtg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no199_c23.g1 MSMg01no199_c23.g1 CHROMAT_FILE:
MSMg01no199_c23.g1 PHD_FILE: MSMg01no199_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:39 2005
         (642 letters)



>mm_chr3_122850898_122851939
          Length = 1042

 Score = 1241 bits (642), Expect = 0.0
 Identities = 642/642 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcatctgcttacaagtttgtttcagctttgaagggagagatcacaggtattattcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttcatctgcttacaagtttgtttcagctttgaagggagagatcacaggtattattcatt 260

                                                                       
Query: 61  tttcatttgtagcattaagcatcggtacccctcacgccaaatttaacatctaaattagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttcatttgtagcattaagcatcggtacccctcacgccaaatttaacatctaaattagat 320

                                                                       
Query: 121 acaggagtgaataataaatgagttaatgagataaagagttgtggtaagtttcctgaagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaggagtgaataataaatgagttaatgagataaagagttgtggtaagtttcctgaagga 380

                                                                       
Query: 181 cagggaactttgcagcgccaaagctcattttcaggaactgttggtgacgagcaggcaatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagggaactttgcagcgccaaagctcattttcaggaactgttggtgacgagcaggcaatc 440

                                                                       
Query: 241 cctgggaaatatctgtttatggccccacctgagtacactttgggactcctccacaaagtc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctgggaaatatctgtttatggccccacctgagtacactttgggactcctccacaaagtc 500

                                                                       
Query: 301 tctgacattttgtccaccagatctccagtctctgttacaagatccccaaatactgggagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctgacattttgtccaccagatctccagtctctgttacaagatccccaaatactgggagg 560

                                                                       
Query: 361 atctgactcgtatctttctcagaggatatttctatcttgggccatcagtgccaggataca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atctgactcgtatctttctcagaggatatttctatcttgggccatcagtgccaggataca 620

                                                                       
Query: 421 ggcctctatgtcattctccttcatgacttggaacatcagctccttccttttcctgcagct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggcctctatgtcattctccttcatgacttggaacatcagctccttccttttcctgcagct 680

                                                                       
Query: 481 gaggtcactgctagcagtggctgacactcaatcaacaaggtgaaccctcgattgacagat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaggtcactgctagcagtggctgacactcaatcaacaaggtgaaccctcgattgacagat 740

                                                                       
Query: 541 tgatgaccaagctggcctggaactcacagagatccacctgcctctgcctcccaagtgctg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgatgaccaagctggcctggaactcacagagatccacctgcctctgcctcccaagtgctg 800

                                                     
Query: 601 ggattaaatgtgttcaccaccatgcctgacatcataagttaa 642
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggattaaatgtgttcaccaccatgcctgacatcataagttaa 842


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space:   652224
Effective search space used:   652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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