Query= MSMg01no201_c20.b1 MSMg01no201_c20.b1 CHROMAT_FILE:
MSMg01no201_c20.b1 PHD_FILE: MSMg01no201_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:21:08 2005
(701 letters)
>mm_chr3_76100717_76101818
Length = 1102
Score = 1108 bits (573), Expect = 0.0
Identities = 585/589 (99%), Gaps = 1/589 (0%)
Strand = Plus / Minus
Query: 114 aatgtaagaaacaggtcttgaaaatgggtcagtagttaagaatgtgctcttcttgcaaag 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1102 aatgtaagaaacaggtcttgaaaatgggtcagtagttaagaatgtgctcttcttgcaaag 1043
Query: 174 aacctagttccatttcaagcaaccatattgagaagttcatctggatctcaactctaactc 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1042 aacctagttccatttcaagcaaccatattgagaagttcatctggatctcaactctaactc 983
Query: 234 caggtcatttgttacctctggcctcatgaaccaccatatgctgacccatgcctacacata 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 982 caggtcatttgttacctctggcctcatgaaccaccatatgctgacccatgcctacacata 923
Query: 294 attaaaaacataaaaataaagtttaaagataaatctaaattatgagtcaacaaaaggggg 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 attaaaaacataaaaataaagtttaaagataaatctaaattatgagtcaacaaaaggggg 863
Query: 354 gacataattttccctttctctatgaccaagctcacaacattttccttctttcagcatgag 413
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 862 gacataattttccctttctctatgaccaacctcacaacattttccttctttcagcatgag 803
Query: 414 attccaggataaattctcatatcttgaaggcatagtctgatagtgaaattgaagaccata 473
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 attcctggataaattctcatatcttgaaggcatagtctgatagtgaaattgaagaccata 743
Query: 474 gtgtctatttagaatattttcattttggccaggccatttgtataagtggattttgttttg 533
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 742 gtgtctatttagaatattttcattttggccaggccatttgtataagtgggttttgttttg 683
Query: 534 tttttatgttaatgtctgtcttctttactgtgactcagactcttctcttcattctg-ttt 592
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 682 tttttatgttaatgtctgtcttctttactgtgactcagactcttctcttcattctgtttt 623
Query: 593 ttctatatcactctcctccacctcatgaaaattaaaaacacagaaacagaattatccagt 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ttctatatcactctcctccacctcatgaaaattaaaaacacagaaacagaattatccagt 563
Query: 653 attgtccattcccattcagtcaccttggaatatagaacagaaaaaagat 701
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 attgtccattcccattcagtcaccttggaatatagaacagaaaaaagat 514
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1102
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1092
Effective search space: 754572
Effective search space used: 754572
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no201_c20.g1 MSMg01no201_c20.g1 CHROMAT_FILE:
MSMg01no201_c20.g1 PHD_FILE: MSMg01no201_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:21:08 2005
(648 letters)
>mm_chr3_75991964_75993011
Length = 1048
Score = 1199 bits (620), Expect = 0.0
Identities = 641/648 (98%)
Strand = Plus / Plus
Query: 1 ttgaagagcacttttgtttgtgctataatcctaatagtgataaaaaagcaaccatcctct 60
||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||
Sbjct: 201 ttgaagagcacttttgtttgtgctataataataatagtgatagaaaagcaattatcctct 260
Query: 61 caaaggggataagaggtagtatattccgggacccattttgagtgattatagtccagaatc 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 caaaggggataagaggtagtatattccgggacccattttgagtgattgtagtccagaatc 320
Query: 121 tgaggtttaggttacttcaaataccatgtttcaatgtagaaacagtttattaagcttcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaggtttaggttacttcaaataccatgtttcaatgtagaaacagtttattaagcttcaa 380
Query: 181 taacaacaaataagaatatcataaatgaatgactttccaaatataatggaggaaacatcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taacaacaaataagaatatcataaatgaatgactttccaaatataatggaggaaacatcc 440
Query: 241 aataggtaggttgaagcaaaaatgtaggccctgttataggtcccagaaaatatctgatgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aataggtaggttgaagcaaaaatgtaggccctgttataggtcccagaaaatatctgatgg 500
Query: 301 catttatagctcttccttgtctggaaactagtgctctgtttgtaaattacaaactatgta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catttatagctcttccttgtctggaaactagtgctctgtttgtaaattacaaactatgta 560
Query: 361 tctaatggtcacaaagatgttaactaagttatagaggatgacaattacgggggataaagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctaatggtcacaaagatgttaactaagttatagaggatgacaattacgggggataaagg 620
Query: 421 tgcccaaagataaggaacccatggaactgcaatatttgagtctattgccacaagaattct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgcccaaagataaggaacccatggaactgcaatatttgagtctattgccacaagaattct 680
Query: 481 agtgccttaatcagccctgcagagtacttatggaaaggtgcaactttttggtaaatttgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agtgccttaatcagccctgcagagtacttatggaaaggtgcaactttttggtaaatttgt 740
Query: 541 tcacagtacttagagtacaatcatgccttatttttgtctgctatgtgatatgtctccagt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcacagtacttagagtacaatcatgccttatttttgtctgctatgtgatatgtctccagt 800
Query: 601 tggatgtttatgctaagatagtaatttgaagttctctgttgtagaagt 648
|||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 801 tggatgtttacgctaagatagtaatttgaagttctctgttgtagaagt 848
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space: 662244
Effective search space used: 662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
