Query= MSMg01no202_c14.b1 MSMg01no202_c14.b1 CHROMAT_FILE:
MSMg01no202_c14.b1 PHD_FILE: MSMg01no202_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:22:52 2005
(330 letters)
>mm_chr3_128779798_128780525
Length = 728
Score = 607 bits (314), Expect = e-178
Identities = 323/326 (99%), Gaps = 2/326 (0%)
Strand = Plus / Plus
Query: 5 gaattcctagatattttagttgagaaacagaagaaagagttgactttcctaactgtagaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctagatattttagttgagaaacagaagaaagagttgactttcctaactgtagaa 264
Query: 65 gtattgcctaacacctcgagcaaatgcgttgttaacaagacatattagagatcatttaaa 124
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtattgcctaacaa-t-gagcaaatgcgttgttaacaagacatattagagatcatttaaa 322
Query: 125 aatcacttggtgggggagggtttgcagaagggagtctaagaaaggggacaacatttgaat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aatcacttggtgggggagggtttgcagaagggagtctaagaaaggggacaacatttgaat 382
Query: 185 tgtaaataaataaaataattaatcaaaaaatcacatagtactggcttcaactattttcac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgtaaataaataaaataattaatcaaaaaatcacatagtactggcttcaactattttcac 442
Query: 245 tattagatttttcagttttacaacagaatgcacagtttattgcgcagaattactaccaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tattagatttttcagttttacaacagaatgcacagtttattgcgcagaattactaccaaa 502
Query: 305 aacctgaaacaacatattttgccttt 330
||||||||||||||||||||||||||
Sbjct: 503 aacctgaaacaacatattttgccttt 528
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 728
Length adjustment: 9
Effective length of query: 321
Effective length of database: 719
Effective search space: 230799
Effective search space used: 230799
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no202_c14.g1 MSMg01no202_c14.g1 CHROMAT_FILE:
MSMg01no202_c14.g1 PHD_FILE: MSMg01no202_c14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:22:52 2005
(293 letters)
>mm_chr3_128854711_128855403
Length = 693
Score = 549 bits (284), Expect = e-161
Identities = 287/288 (99%)
Strand = Plus / Minus
Query: 1 ctagtaagagatgtctccctgagttgatgagtggagtcagaggacacatggactctggta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ctagtaagagatgtctccctgagttgatgagtggagtcagaggacacatggactctggta 429
Query: 61 tgaataggaccatagtacaatgtagattttcataatgactttttctgtcagttctccaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tgaataggaccatagtacaatgtagattttcataatgactttttctgtcagttctccaaa 369
Query: 121 ttattcaatatttttgtccccattcttacaaaagaaaagtgtctatagactacatacttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ttattcaatatttttgtccccattcttacaaaagaaaagtgtctatagactacatacttc 309
Query: 181 ttgttctatttatttatttatatttcaaattgttgaatagcaagagtagcacggacagta 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 308 ttgttctatttatttatttatatttcaaactgttgaatagcaagagtagcacggacagta 249
Query: 241 ttaaaacctctgaatttaatactgtcaaattaaatgctcaaacccttg 288
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ttaaaacctctgaatttaatactgtcaaattaaatgctcaaacccttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space: 194256
Effective search space used: 194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
