BAC Information

Click to search

BAC

Clone NameMSMg01-202E14
Chromosome3 (Build37)
Map Location 118,685,472 - 118,685,727
singlet/doubletsinglet
Overlap geneDpyd
Upstream genenone
Downstream geneLOC100043275, LOC100043278, Ptbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-202E14.T7 (MSMg01no202_e14.b1)MSMg01-202E14.TJ (MSMg01no202_e14.g1)
ACCAG387501AG387502
length720748
length of high quality
(start - end)
---282 (77 - 358)
definitionCHROMAT_FILE: MSMg01no202_e14.b1 PHD_FILE: MSMg01no202_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:03 2005CHROMAT_FILE: MSMg01no202_e14.g1 PHD_FILE: MSMg01no202_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GTGATTCTTCAGGTTACATATAACGAACGAATATTTGACACTCGATTTAA
GACACACCCTCTGACTTGTTGCCCCCCAATGAGAATAGACCCTTTAATTA
TGACCCTTTCTTCATAATGACCTGATGATAGGGTTGTCATGGTTATATCT
GCACTTTACACAAATGCAACCCGCATAACGCATTCTTTATAACACCTCAT
TTACTCACGATCAACCACGACTAACACATGATCAAATGTGACCCTGACAC
AGATAAGAATGTATCATAATATTTATCTGATAACCATACCTGCCAGATTT
CTGTAATATGAATAATATTGCTCCCCCGCCTCACCCCCATGACAAATTGT
ATCGTGAGCCTAGACATCTTTCCCCACTTATTATAAGAATGCCACCTGTG
CTACCACACTGTTACCCCCCTATAATCACCTTGGTGGTAACCCTTGTATT
CCCCGCCTACAAATTTCGGCCCCCCTTTTACTTTCACCTAATTCCCCTTC
CCAATTTCTCTCCCCCCATTTTTTTTTTTCCCCTTTCCCCTATTCTTCAC
CTCGTACCTTTTCCCTTCCCCCCCCCACCTTATTAATCTACTCCCTTCTT
TCCACCTTACAAACATTACAACTCTCCTCGCCTTCTTTATTTACTATTTT
TAATTTCCTTTCTCTTCTCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGCAGAGACTTTGTCCCAGTTC
CTCCACTTGCTCAGGCAGAGCTCAGTAAGAAAAGAAGAGGCAAGGAGATA
TAAAGATTAACAGTAAGGCTAAGTACTGAATATCTTGGGGTTAGCAACAG
TATCCTCATTACCTGGTTTTAGTTTACTTTATTCCTTGTTTCTTTTTTTT
TTCTTTTTTCATTGCATCAGCAAGTACATGTCCTGTTATGTGCTCTTCCT
GTTTGTACCATGTCCTCTCCTCTCTGTGTATATATATACACACACACACA
CACACACACTTTTTTTTTCCCCCCCCCACCCCCACACATATATATATATA
TATGTATGTATATATATACGACCCACAAATTAAATGGGACTCCTGAGGAT
GATATTGAGTGTGTCTCTGACTTTCATGCCTTCTCTTGGATTCTTCTACT
TTTGTTGATCCGCCTTGTCCAACTTTGATGTGATGTGTTTTACTGTGTCT
CTGCTCCTCTTGCTTTGATTCATACTCTGTGCGTACCTATCTACTACAGC
TATTCTGCTTTCGATACACTGAACTCTCTTATTCCCTTCTTTTTTATATT
CTCCCTTTCCTTGCGCCTTATTTTTTCCGAATTATTTTTCAACCTTTTTT
ATTTTACCCTCTATTGTCGCAATCACTTCATTTTCCCCCGATTATAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no202_e14.g1 MSMg01no202_e14.g1 CHROMAT_FILE:
MSMg01no202_e14.g1 PHD_FILE: MSMg01no202_e14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:03 2005
         (282 letters)



>mm_chr3_118685262_118685948
          Length = 687

 Score =  429 bits (222), Expect = e-125
 Identities = 246/256 (96%), Gaps = 5/256 (1%)
 Strand = Plus / Minus

                                                                       
Query: 12  tttgtcccagttcctccacttgctcaggcagagctcagtaagaaaagaagaggcaaggag 71
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tttgtcccagttcctccacttactcaggcagagctcagtaagaaaagaagaggcaaggag 407

                                                                       
Query: 72  atataaagattaacagtaaggctaagtactgaatatcttggggttagcaacagtatcctc 131
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 406 atataaagattaacagtaaggctaagtactgaatatcttggggttagccacagtatcctc 347

                                                                       
Query: 132 attacctggttttagtttactttattccttgtttctttttttttt---cttttttcattg 188
           || |||| |||||||||||||||||||||||||||||||||||||   ||||||||||||
Sbjct: 346 atcacctagttttagtttactttattccttgtttctttttttttttttcttttttcattg 287

                                                                       
Query: 189 catcagcaagtacatgtcctgttatgtgctcttcctgtttgtaccatgtcctctcctctc 248
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 286 catcagcaagtacatgtcctcttatgtgctcttcctgtttgtaccatgtcctctcctctc 227

                           
Query: 249 tgt--gtatatatata 262
           |||  |||||||||||
Sbjct: 226 tgtatgtatatatata 211


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 687
Length adjustment: 9
Effective length of query: 273
Effective length of database: 678
Effective search space:   185094
Effective search space used:   185094
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)