BAC Information

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BAC

Clone NameMSMg01-202K17
Chromosome3 (Build37)
Map Location 126,314,804 - 126,475,139
singlet/doubletdoublet
Overlap geneCamk2d
Upstream geneNdst4, Ugt8a, Arsj
Downstream geneAnk2, LOC100043749, LOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-202K17.T7 (MSMg01no202_k17.b1)MSMg01-202K17.TJ (MSMg01no202_k17.g1)
ACCAG387738AG387739
length714724
length of high quality
(start - end)
228 (126 - 353)234 (126 - 359)
definitionCHROMAT_FILE: MSMg01no202_k17.b1 PHD_FILE: MSMg01no202_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:33 2005CHROMAT_FILE: MSMg01no202_k17.g1 PHD_FILE: MSMg01no202_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,474,915 - 126,475,139)(126,314,804 - 126,315,037)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAATAATTTCCCGGAGGGAAAAGAGTTCAGGGCTCAAAATGGCACT
TAATCACTGAACCTAATCTGTCCTAATACTTTTTAAGATTATTTATATAA
TGTTAGATATATAGTATAAATGTAAAATATCATGTATGATCAAAGTGTAC
AGAAAATCATAAATCTTAAAGTGAAGTTAAATTCCATGCCCATTCCCTGG
GGTATGGAAATAAAGCACGTTACTTATTGTTAACGTTAGCAAACTATTCC
TTTCTGAAAGACAGGAATTTATCAGTCTCAAGGATATGTTATGAGCTGAA
CGGAGGCTGTGGTTGAGGAAGCACTTGCATTCATGTATGGAACGAGTCCA
CATATTGCTTGAGTGTTTGCCTTTCCGGCCATAACTGCAGCTGAACAGTC
ATTACAAACTGTGTGGCTCTTTCTTCATCTTCTCCAACAGATTTACTCAC
CTTTAGGTCCCGATGGACTACGCCCATCTGATGTCAGTGTAACACAGCCT
CCAGGATCTGCTGAATGCAATGACTGCATGCTGACACCAGGGGGCGTGTG
TTAGTTCCCAAGCTTACACTCACTGTCTGTATACCCTCATAGAGACCGGT
CTATAGAGTCTAGCTAGCAGACAACTTGTGTTGTGGTTGACCTCCTTCGG
TCGTATGAACACTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTTCACCCTCTGAGGGTGAATCAT
GAAGTGGCAGGCTCTGTTGGACCGAAGGAAGGAAGGAAGGAAGGTGGATC
CTGAGATTTATAGCCCTGAGTCATTAGGGGTAAACAGCTGATAAGAGAGC
CACAGCTAACTGCTTATCAACCCCTCATTCTGTTTTATGTAGCCTTGGGG
CAAAATACAAACCCCATAAGAGCCACTAAGTAAAAAACAAAGGACTTGAA
AATAGAGTATTTCTTTTTAAAGTCAAGTGTTATGGAGTGTTAAAAATAAT
TAAAGTATTTTTTTTTTAGCCCCCCGCCCGGAGTGTTACTGGAGATTGCA
GTGTATGTTGTGACTGCTGTGAAAAATAATGAAGGGGTCTACTTAGAGCC
AAAAGTGACTAGGACATCTAACCAATAGGATTCCACTCAACACCAGATTC
TTGTGTCTAAAAGACTAGCACTGGTCTGTACAGTTACGTAGAGGAATAAA
TGTTTTGCAGAGTCTGTTTTCCTGTAGTTTTGCTAATACATGTTTAGGGA
CCCAGAGCCTTTAATGTCACATCTGTGCATACTGCTGCCTTCTTCTCTCT
CTCTTTTTATGAAACTGAGAGTTACACAGTTTATTCCACAGTGTTGAATC
ACTTAAATAATGAAAAAAAATCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no202_k17.b1 MSMg01no202_k17.b1 CHROMAT_FILE:
MSMg01no202_k17.b1 PHD_FILE: MSMg01no202_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:33 2005
         (228 letters)



>mm_chr3_126474715_126475342
          Length = 628

 Score =  404 bits (209), Expect = e-117
 Identities = 221/225 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atactttttaagattatttatataatgttagatatatagtataaatgtaaaatatcatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 atactttttaagattatttatataatgttagatatatagtataaatgtaaaatatcatgt 366

                                                                       
Query: 61  atgatcaaagtgtacagaaaatcataaatcttaaagtgaagttaaattccatgcccattc 120
           ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 365 atgatcaaagtgtactgaaaatcataaatcttaaagtcaagttaaattccatgcccattc 306

                                                                       
Query: 121 cctggggtatggaaataaagcacgttacttattgttaacgttagcaaactattcctttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 cctggggtatggaaataaagcacgttacttattgttaacgttagcaaactattcctttct 246

                                                        
Query: 181 gaaagacaggaatttatcagtctcaaggatatgttatgagctgaa 225
           ||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 245 gaaagacaggaatttatcagtttcaaggatatgttaggagctgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 628
Length adjustment: 9
Effective length of query: 219
Effective length of database: 619
Effective search space:   135561
Effective search space used:   135561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no202_k17.g1 MSMg01no202_k17.g1 CHROMAT_FILE:
MSMg01no202_k17.g1 PHD_FILE: MSMg01no202_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:34 2005
         (234 letters)



>mm_chr3_126314604_126315237
          Length = 634

 Score =  422 bits (218), Expect = e-122
 Identities = 230/234 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggaaggaaggaaggaaggtggatcctgagatttatagccctgagtcattaggggtaaac 60
           |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 aggaaggaaggaaggaaggttgatcccgagatttatagccctgagtcattaggggtaaac 260

                                                                       
Query: 61  agctgataagagagccacagctaactgcttatcaacccctcattctgttttatgtagcct 120
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctgataagagagccacagcaaactgcttatcaacccctcattctgttttatgtagcct 320

                                                                       
Query: 121 tggggcaaaatacaaaccccataagagccactaagtaaaaaacaaaggacttgaaaatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggggcaaaatacaaaccccataagagccactaagtaaaaaacaaaggacttgaaaatag 380

                                                                 
Query: 181 agtatttctttttaaagtcaagtgttatggagtgttaaaaataattaaagtatt 234
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 agtatttctttttaaagtcaagtgttatggagtgttaaaaataattagagtatt 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)