Query= MSMg01no202_o17.b1 MSMg01no202_o17.b1 CHROMAT_FILE:
MSMg01no202_o17.b1 PHD_FILE: MSMg01no202_o17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:54 2005
(249 letters)
>mm_chr3_13123280_13123930
Length = 651
Score = 435 bits (225), Expect = e-126
Identities = 244/251 (97%), Gaps = 2/251 (0%)
Strand = Plus / Minus
Query: 1 caagtgccatttatccctccatttcagaagttggtgtggatttaaataaacaatactgta 60
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||
Sbjct: 451 caagtgccatttatccctccattttagaagttggtgtggatttaagtaaacaatacagta 392
Query: 61 agacatttagggacat--taacaaagcatgtcatggctcacacagcaagtgaacaaggac 118
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 agacatttagggacattataacaaagcatgtcatggctcacacagcaagtgaacaaggac 332
Query: 119 tcatgagcaagtcaggctgaggttacagtcagaacacagtagttccaaaaccatctggct 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 331 tcatgagcaagtcaggctgaggttacagtcagaacacagtagttccaaaaccatctagct 272
Query: 179 gagaaatgggcccatgcagagaggacagctatgttccatagggtggaaatatatagtggt 238
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 271 gagaaatgggcccatgcagagaagacagctatgttccatagggtggaaatatatagtggt 212
Query: 239 ttgttaggaga 249
|||||||||||
Sbjct: 211 ttgttaggaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 651
Length adjustment: 9
Effective length of query: 240
Effective length of database: 642
Effective search space: 154080
Effective search space used: 154080
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no202_o17.g1 MSMg01no202_o17.g1 CHROMAT_FILE:
MSMg01no202_o17.g1 PHD_FILE: MSMg01no202_o17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:54 2005
(322 letters)
>mm_chr3_13097664_13098388
Length = 725
Score = 600 bits (310), Expect = e-176
Identities = 320/324 (98%), Gaps = 3/324 (0%)
Strand = Plus / Plus
Query: 2 ctgaatgaatattgaagaaatccatacagtaacaatattgctcacatgacacttattttc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ctgaatgaatattgaagaaatccatacagtaacaatattgctcacatgacacttattttc 261
Query: 62 cagcacatgtacatgacttgagatgtaggttggtaaa-ggagaaatgatcaggcaactta 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 262 cagcacatgtacatgacttgagatgtaggttggtaaaaggagaaatgatcaggcaactta 321
Query: 121 aaaaaaa--tacagaatcctgcagaaggaatgagtgtggagatactggccacccatgagt 178
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aaaaaaaaatacagaatcctgcagaaggaatgagtgtggagatactggccacccatgagt 381
Query: 179 gtggtgtatcaacatcagctggcattttacaaaaagatcaaatattatgtttctcaagta 238
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 382 gtggtgtatcaacatcagctggcactttacaaaaagatcaaatattatgtttctcaagta 441
Query: 239 ccttttatttatttctaaacatggggcttctatcatttgacaataactatataagttaac 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ccttttatttatttctaaacatggggcttctatcatttgacaataactatataagttaac 501
Query: 299 atttcacaatgatattaaacatag 322
||||||||||||||||||||||||
Sbjct: 502 atttcacaatgatattaaacatag 525
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 725
Length adjustment: 9
Effective length of query: 313
Effective length of database: 716
Effective search space: 224108
Effective search space used: 224108
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
