BAC Information

Click to search

BAC

Clone NameMSMg01-203C18
Chromosome3 (Build37)
Map Location 126,303,155 - 126,303,473
singlet/doubletsinglet
Overlap geneCamk2d
Upstream geneNdst4, Ugt8a, Arsj
Downstream geneAnk2, LOC100043749, LOC100043361, LOC100043364, Larp7, 4930422G04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-203C18.T7 (MSMg01no203_c18.b1)MSMg01-203C18.TJ (MSMg01no203_c18.g1)
ACCAG388042AG388043
length751874
length of high quality
(start - end)
327 (45 - 371)60 (79 - 138)
definitionCHROMAT_FILE: MSMg01no203_c18.b1 PHD_FILE: MSMg01no203_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:15 2005CHROMAT_FILE: MSMg01no203_c18.g1 PHD_FILE: MSMg01no203_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCACGATACTTCCCTTCATCTGATTTGCTCTTGTTCTGAGAAAGAAT
GCAAACTGACCAGGAACACCATGCTGTCCTGGTGTGAAAACTAATGAGGG
ACATGCCATGCTAATTACCTCTCCCTTTCGAGCCTCCACTCTATTGGAAG
TTTTTATTTTTTTAGAATCACGAGGGATGCAGACGTTTAAGTGCCAGTTT
AAGGGAAAGAAGAAGAAGACTGAAAACATTGAGTCGGGTTTTTTTTTTTC
TTCTTCTAGTGATTATGTTATTTCTTCCAGTGTGATATGTCCTTTGGCAA
TGGTGGGCTATCTTTTTTTTGCCCCCCCCCCGAGGNNNNNNNNNNNNNNN
NNNNNGNNNNNNNCCCCCCCTTTAAAAAAAAAAAAAATTTTTGGGTTGCT
CTCTTTTTATCTTTCCCATTTACTTCCTTTCCCCCCTCTTCCCTTTTTTC
TTCCTCCCCCCTTTCCCCTTCTTCCCCTTTTTGCTCCTCTTCCCTCCCTC
CCCCCATTCTTCTCCTCATTTCCCTTTCCTTCCCCTCTCTTTCTCCCCCC
CCTCCATTTCCTCTCGTCCTACTTTCACTTATTATTCCCCCTTTTTCTTC
CCACTCCCTTTTATTTCTCCCTCTTTTTCTTTTCTCCCCTCCTCTTCTTT
TTTTCCCCTTTTTTTTTTTTTTTCCCCCCCTTTCTCCTCTTTTTCCTTTT
T
ACAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGTACCAGGAGGAAGAAGAG
ACTGGAGGAAGGAGAAAGGGTTTTTTTCTTGTTGTTGTTGNTGNNNNNNN
NNNNNNNNNNTCCTTNTNCCTNTTTTTTNTCTCCTTTCCTCTCCCCCCTT
CCCCCCTTCTNCCCTCCCTCCTCCCTTCCCCCTCTCCCTCTTTCTTTCCC
TCCTCTCCCTCCCTCTCCCCCCCTCTCTTCTCCCTTCTCCTCCCCCTTTT
TCCCCCCTCCCCCCTCCCCCCCCTTTTTTTTTCTTCCCCCCTCCCTTCCC
CCTTTTCCCCCTTTTTTTTTTTTCTTCCNNNNCCCCNNNCCCCNNNNTTT
TTNTTTTNNTTTTTTTTCCTTTTTTTCCCCCCCCCCCAAAAAAAAAAAAA
AAACTCCCTCCTCCCTCCCCCCCCCAATACATTCATACCCCCCCTATATC
CCCTTTTCCCCCCATTTATTATCCTCTCCCTTTTCTTCCCACTCCACCTT
TACCCCTACATCCCCTCATCCCTATTCTCCCCCCCCTATTTTTTACCCCA
CCCTACTCATTCCCCTCCACCCTATTCTACCCCCCCTTATATAAAACCAA
ATCCCACTACTCTCTCCCACTACATCCTATCACTTAAATCACTAATATCC
CCACAAACACTAAAACTAAATCCCTCAAAACATAACCTATAAATCCCCCC
TAAACCAACAACAATAATACCACCCATATCCCATATCCCCAACCCTACCC
CTCCTTCCAATACCCTTTTCCATTAATCACCCCCCTNCACAACCCCCCCA
CCCTCCATCTCACCAAACCCCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no203_c18.b1 MSMg01no203_c18.b1 CHROMAT_FILE:
MSMg01no203_c18.b1 PHD_FILE: MSMg01no203_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:15 2005
         (327 letters)



>mm_chr3_126302952_126303674
          Length = 723

 Score =  553 bits (286), Expect = e-162
 Identities = 313/324 (96%), Gaps = 6/324 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccacgatacttcccttcatctgatttgctcttgttctgagaaagaatgcaaact 63
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccacgatacttcccgtcatctgatttgctcttgttctgagaaagaatgcaaact 263

                                                                       
Query: 64  gaccaggaacaccatgctgtcctggtgtgaaaactaatgagggacatgccatgctaatta 123
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaccaggaacaccatggtgtcctggtgtgaaaactaatgagggacatgccatgctaatta 323

                                                                       
Query: 124 cctctccctttcgagcctccactctattggaagtttttatttttttagaatcacgaggga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cctctccctttcgagcctccactctattggaagtttttatttttttagaatcacgaggga 383

                                                                       
Query: 184 tgcagacgtttaagtgccagtttaagggaaagaagaagaagactgaaaacattgagtcgg 243
           |||||| || |||||||||||||||||||||||||||||   ||||||||||||||||||
Sbjct: 384 tgcagaagtataagtgccagtttaagggaaagaagaaga---ctgaaaacattgagtcgg 440

                                                                       
Query: 244 gtttttttttttcttcttctagtgattatgttatttcttccagtgtgatatgtcctttgg 303
           ||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttttttttctt--tcttctagtgattatgttatttcttccagtgtgatatgtcctttgg 498

                                   
Query: 304 caatggtgggctatc-tttttttt 326
           ||||||||||||||| ||||||||
Sbjct: 499 caatggtgggctatcatttttttt 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 723
Length adjustment: 9
Effective length of query: 318
Effective length of database: 714
Effective search space:   227052
Effective search space used:   227052
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)