Query= MSMg01no203_p15.b1 MSMg01no203_p15.b1 CHROMAT_FILE:
MSMg01no203_p15.b1 PHD_FILE: MSMg01no203_p15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:21 2005
(682 letters)
>mm_chr3_12347057_12348138
Length = 1082
Score = 1243 bits (643), Expect = 0.0
Identities = 670/679 (98%), Gaps = 1/679 (0%)
Strand = Plus / Plus
Query: 4 ggaattctgtcttcttgccatttggtgatgtacattaagaaagccttcatgtatggacat 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgtcttcttgtcatttggtgatgtacattaagaaagccttcatgtatggacat 263
Query: 64 agttttacattcttctactctagtagattttgcctttaaaaaacacttattttatgtcta 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agttttacattcttctactctagtagattttgcctttaaaaaacacttattttatgtcta 323
Query: 124 tatgcctttatttgcccccattccattatctacacctatctagctagtcctttttttctt 183
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 324 tatgcctttatttgcccccattccattatctacacctatctagctagtcttttttttctt 383
Query: 184 tatttaggttctatagttctatagattaaagttgttttatcattaacttaaaatctaata 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tatttaggttctatagttctatagattaaagttgttttatcattaacttaaaatctaata 443
Query: 244 catgcttttacttctctctttgagtcttggttatctcactcagcatacatttttctagat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 catgcttttacttctctctttgagtcttggttatctcactcagcatacatttttctagat 503
Query: 304 tcatccatttacctgcaagtttcattttttaaatatcagaataataatccattgtacaaa 363
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 504 tcatccatttacctgcaagtttcattttttaaatatcagaataataattcattgtacaaa 563
Query: 364 tactacacaccactgatgtttaaaatcaaatagacataacagatatttgcaaaacatttc 423
||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 564 tactacagataactgatgtttaaaatcaaatagacataacagatatttacaaaacatttc 623
Query: 424 accaaaacacaaaagaatatatactcatcttaacacttcatggagcttccacccaaattg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 accaaaacacaaaagaatatatactcatcttaacacttcatggagcttccacccaaattg 683
Query: 484 agcatatacttaaatacaaaacacatttctacagatacaagaaaattgaaataacatctt 543
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 684 agcatatacttaaatacaaaacacatttctacagatacaagaaaattgaaataacaactt 743
Query: 544 atatcctatctgaccattgcatattaatgctggataccaatagcctaagcaacagaaaac 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 atatcctatctgaccattgcatattaatgctggataccaatagcctaagcaacagaaaac 803
Query: 604 ttaagaaaaatggaaactgaacaattcactactgaaagaaaaaaatagatcaagatgaaa 663
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 804 ttaagaaaaatggaaactgaacaattcactactgaaagaaaaaa-tagatcaagatgaaa 862
Query: 664 ttaagaaacaaatgaaaga 682
|||||||||||||||||||
Sbjct: 863 ttaagaaacaaatgaaaga 881
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space: 720384
Effective search space used: 720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no203_p15.g1 MSMg01no203_p15.g1 CHROMAT_FILE:
MSMg01no203_p15.g1 PHD_FILE: MSMg01no203_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:21 2005
(346 letters)
>mm_chr3_12497715_12498460
Length = 746
Score = 607 bits (314), Expect = e-178
Identities = 335/342 (97%)
Strand = Plus / Minus
Query: 1 caggccaaagaacttgtctttgaatcatcggacagcatatagttatccacccctatgaaa 60
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 404 caggccaaagaacttgtctttgaatcatcggacagcgtatagttatccaatactatgaaa 345
Query: 61 tatggtccaatgacttggcttctaactctcctggaataaaagtgcatacataaaagaagt 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 344 tatggtccaatgacttggcttctaactctcctggaataaaagtgcatacagaaaagaagt 285
Query: 121 aagaaagaagttaggcattaagataggaatacctgttgtaatgaatactgtaaacataga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 aagaaagaagttaggcattaagataggaatacctgttgtaatgaatactgtaaacataga 225
Query: 181 agtaggagaggtctgccactaaggaaataaaaatatttaaaaattaatggaagtcaatta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 agtaggagaggtctgccactaaggaaataaaaatatttaaaaattaatggaagtcaatta 165
Query: 241 cttgggcccagtattaagaaaaacaaccaaaacctaatccataaccatattgttcatttc 300
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 164 cttgggcccagtattaagaaaaacagccaaaacctaatccataaccatattgttcatttc 105
Query: 301 gcaatttaactaggtttgttgttgttgctggtttttgtttgg 342
| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 gtaatttaactaggtttgttgttgttgctggtttttgtttgg 63
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space: 248369
Effective search space used: 248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
