CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAAATATATATCCGGATTCCACAGAAATGCATTTTTTACACATGTT
TCCACATGGGAAAATGTGGAGATGAAGTAGAATCAAAATTTATATAGCAC
TGACTAAAAAGTAGGAAGAAGGGGACTGAAAACACTATCTAGAAAATACT
CTGAGCCAAACAACCTGTATAGATGTGTGATTTTAATAAAAAGGGGGCAT
GCATGTTCTCTGGTTTGTGGTTAAGTCTCTGTGAGTCCCTATGGGCCCAT
GTTAGTTGATTCTATAGGTTTTCTTGTGGTTTCCTTGACACCTCTTGTTC
CTTCAATTCTTCTTCTTTTCTTCCGTAAGATTTCCCAAGATCAGCCTAAT
GTTTGGCTGTGGGACTCTGCATGTGTTTTCATCATATGCTGGTTGAAGTC
TCTCAGATGACAGTTATACAGGTTTCTGTCTGAAAGCATAGCATATGCCT
AGTATATTACAAATTGATATGCCAAGGTTTGTTATCCATAGGAGGTCTCC
CTTTCTCTGAAGAGAAATGTATAGGACTAGGGGGAATGGAGGAAAGAGTG
NGTAAGNGNNANNNNNTNNNNTTTTTTTTTTNTTTTTTTTTTTTTTTTTT
TTTTGATTTTTTTTTTTTATTTTGTTNTGTTCCGTTATATTTAGTAATTA
AGAAGATGAGTAGTGTTTTATAGTTCGATCTTTTGTTTCTTG

TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCAGCAGAGCAATTTCAAATGGCCA
AAAAGCACTTAAGGAGGTATTTGATCCAGAACAGTCAGAGGGTGGACTAA
GAGGGGCATAAAACCTGGACTGTACAAAAAGTTTAAATAAAATTAAAACA
AGAAAGAAAAAGAAATGTTTATCATCCTTAGCCACCATGGAAATACAAAT
CAAAAACACTTTGAGTGTCTATCTCACACTGCTCTGGTAAAAATTCCAAA
CAACTGGAACACTTCTCCATTGATAATGGTAGTGCAAAATCGTACATTTA
CTTTGAAAACCAATATTATTTTATTGTTAACAACACATTGAGAACCAATC
TACTCAATAACCACCTATTTCAGTTTTGGGCATATAACCCAAAGATGCTC
CATTATACCAAAAGTACACTTGCACATTTATATTCATAGTGGTTTTGGTG
GTTTGAATATGCTTGGTCCAGGGAGTGGCACTATTAGGATGTGTAGCCTT
GTTGTAGGAAATGTGTCATTGTTGGGGTGGGCAATGAGACCCTCTTCGTA
ACCACATAAGAGCCAGTCTTCTTCTATCAGCCTTCAGATGAAGATATAGA
ACTTGCAGCTACTCGAGCCCCATGCCCGCCTAGACACCGCCATGTTCCTG
CCTTGATCATGATGGACCAAACCTCTGGGGAACTCACTTATAAGGATGTA
T

Query= MSMg01no204_o24.b1 MSMg01no204_o24.b1 CHROMAT_FILE:
MSMg01no204_o24.b1 PHD_FILE: MSMg01no204_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:26:40 2005
         (557 letters)



>mm_chr3_11684314_11685270
          Length = 957

 Score = 1025 bits (530), Expect = 0.0
 Identities = 547/554 (98%), Gaps = 4/554 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaaatata--tatccggattccacagaaatgcattttttacacatgtttccaca 62
           ||||||||||||||  |||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaaatatacatat--ggattccacagaaatgcattttttacacatgtttccaca 262

                                                                       
Query: 63  tgggaaaatgtggagatgaagtagaatcaaaatttatatagcactgactaaaaagtagga 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgggaaaatgtggagatgaagtagaatcaaaatttatatagcactgactaaaaagtagga 322

                                                                       
Query: 123 agaaggggactgaaaacactatctagaaaatactctgagccaaacaacctgtatagatgt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agaaggggactgaaaacactatctagaaaatactctgagccaaacaacctgtatagatgt 382

                                                                       
Query: 183 gtgattttaataaaaagggggcatgcatgttctctggtttgtggttaagtctctgtgagt 242
           |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 383 gtgattttaataaaaaggggacatacatgttctctggtttgtggttaagtctctgtgagt 442

                                                                       
Query: 243 ccctatgggcccatgttagttgattctataggttttcttgtggtttccttgacacctctt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ccctatgggcccatgttagttgattctataggttttcttgtggtttccttgacacctctt 502

                                                                       
Query: 303 gttccttcaattcttcttcttttcttccgtaagatttcccaagatcagcctaatgtttgg 362
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gttccttcaattcttcttcttctcttccgtaagatttcccaagatcagcctaatgtttgg 562

                                                                       
Query: 363 ctgtgggactctgcatgtgttttcatcatatgctggttgaagtctctcagatgacagtta 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ctgtgggactctgcatgtgttttcatcatatgctggttgaagtctctcagatgacagtta 622

                                                                       
Query: 423 tacaggtttctgtctgaaagcatagcatatgcctagtatattacaaattgatatgccaag 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tacaggtttctgtctgaaagcatagcatatgcctagtatattacaaattgatatgccaag 682

                                                                       
Query: 483 gtttgttatccataggaggtctccctttctctgaagagaaatgtataggactagggggaa 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gtttgttatccataggaggtctccctttctctgaagagaaatgtataggactagggggaa 742

                         
Query: 543 tggaggaaagagtg 556
           ||||||||||||||
Sbjct: 743 tggaggaaagagtg 756


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)