Query= MSMg01no205_e22.b1 MSMg01no205_e22.b1 CHROMAT_FILE:
MSMg01no205_e22.b1 PHD_FILE: MSMg01no205_e22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:09 2005
(699 letters)
>mm_chr3_42120615_42121713
Length = 1099
Score = 1274 bits (659), Expect = 0.0
Identities = 686/695 (98%)
Strand = Plus / Plus
Query: 5 gaattcaatcataatccttagtaggaatagaactcaaataatgtgctcctaatttagagt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatcataatccttagtaggaatagaactcaaataatgtgctcctaatttagagt 264
Query: 65 acccacttagatttctactgcttgtctcaaatgaagcagaaagccacaaacttcttctaa 124
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acccacttagatttctactgcctgtctcaaatgaagcagaaagccacaaacttcttctaa 324
Query: 125 gcatgcacactgcttttcagacagcacactgccttctgatgagctgcttgcaagaacgga 184
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 325 gcatgcacactgcttttcagacagcacactgccttctgatgagctgcttgcaggaacgga 384
Query: 185 ttcatgttttctccttttgttaaagatcaaaacctttctgtgttttctcatgcccatgtc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttcatgttttctccttttgttaaagatcaaaacctttctgtgttttctcatgcccatgtc 444
Query: 245 ctgtggttttctatgattattcagacttaagcccaggattgggctccttcttattctttc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgtggttttctatgattattcagacttaagcccaggattgggctccttcttattctttc 504
Query: 305 agcccagagctccctcacagctttgtgtatagaattaagcatgttggttacttatttttt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agcccagagctccctcacagctttgtgtatagaattaagcatgttggttacttatttttt 564
Query: 365 tagccaccgcagtttttacaaaaataaatttgtaaaagaatttagcttgctcctgaacat 424
|||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tagctagtgtagtttttacaaaaataaatttgtaaaagaatttagcttgctcctgaacat 624
Query: 425 agtagcattttcaaaagaacacaatgtagcaaaaattatttgtcaagaatccattgtcat 484
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgtagcattttcaaaagaacacaatgtagcaaaaattatttgtcaagaatccattgtcat 684
Query: 485 ttcccactacccttttgcaccatgtaccagctggtgtactttgggtgaatggctgggtaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttcccactacccttttgcaccatgtaccagctggtgtactttgggtgaatggctgggtaa 744
Query: 545 tggctcagttcccagggagaaggaaatgaatgaaaatctaagcaactttttgtttgtttg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tggctcagttcccagggagaaggaaatgaatgaaaatctaagcaactttttgtttgtttg 804
Query: 605 ttttgttttgtttttaagtgcaattaagttccatttaagaagacactgtgtttggtttca 664
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 805 ttttgttttgtttttaagtgcaattaagttccatttaagaagacactgtgtctggtttca 864
Query: 665 agctgttgtcccaggcctacggatgtatctagtgc 699
||||||||||||||||||| |||||||||||||||
Sbjct: 865 agctgttgtcccaggcctatggatgtatctagtgc 899
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1099
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1089
Effective search space: 750321
Effective search space used: 750321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no205_e22.g1 MSMg01no205_e22.g1 CHROMAT_FILE:
MSMg01no205_e22.g1 PHD_FILE: MSMg01no205_e22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:09 2005
(672 letters)
>mm_chr3_42166171_42167242
Length = 1072
Score = 632 bits (327), Expect = 0.0
Identities = 351/361 (97%), Gaps = 6/361 (1%)
Strand = Plus / Minus
Query: 313 ctctgagttcaacaaggtaccatgcctctgaaaataacctagaagtggaaactgatctga 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1072 ctctgagttcaacaaggtaccatgcctctgaaaataacctagaagtggaaactgatctga 1013
Query: 373 gaagactccctaagtcaaattcaagatccaaaagacttgggtttgagcatgcacttgtgg 432
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 1012 gaagactccctaagtcaaattcaagatccaaaagacttgggtatgaacatgcacttgtgg 953
Query: 433 aagtgtgagggtgggtacacacacacacacacacacacacacacacacacacacacactc 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952 aagtgtgagggtgggtacacacacacacacacacacacacacacacacacacacacac-- 895
Query: 493 acacactcacacactcacacacacgtgcacttagacgcaaatgtgcaaaaaaaaa-taca 551
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 894 --acactcacacactcacacacatgtgcacttagacgcaaatgtgcaaaaaaaaaataca 837
Query: 552 gaaattgtaggataatgcaaaagcatcagtacttcagaatttatatttaaaaagacactt 611
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 836 gaaattgtaggataatgcaaaagcatcagtagttcagaatttatatttaaaa-gacactt 778
Query: 612 aacttccaaaatggactagcaaggaaaacctcagattttaatatttgtttgaaatatcat 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 aacttccaaaatggactagcaaggaaaacctcagattttaatatttgtttgaaatatcat 718
Query: 672 a 672
|
Sbjct: 717 a 717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space: 703044
Effective search space used: 703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
