TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCTTGTCCTAGTATGACATCTCATTGTGAGGAAACAACATGTGAAG
ATCTTCCCAGATTTCTGGGTTGAGCTGTAACCCAGAGAATGATGACAGAA
CCTGACTGGGAAGGCTGCCTAAGACAGGAACAATGGACCATGCAAACTAA
GGCACAAAGGAAATTCACCCTGAGATAAAGCTTACAAGAATCCACTTGAA
CATTTCTGATCTTCAATTCTTTCCCCCTGCTTACAAAGAATATGGTCAGA
GAGGTGGAGTTTCCACGATCTTGGTTTCCTCAGATGCTGAATGAACCACA
ATGAACGCCTTAGAATGTATAGATCAACTCAAAAAATGAAAACATGAGTC
ATGATGCTTCCTTAGAAGGAATGAGAATGTAGTTTGTTTTCAGCCATAAC
ATGTGTTTTGGGTTCCCTATGCCATCCATAAGAGAAAAATGTTGAGGAAA
ATCTTAAGGCTTTTTTTCCCTTCATTTGTGTTTGTTTTTCAAGCAATATC
TAATCTCCTTTCCACATTTAGCGGCAACTTTGCTAACTACCTTCAGAGAC
TATACAAATAGATGCAGACTGTCAGTAGACATGGAATACTGGAAAGGTCA
ACATACATTAATCCACCAGGCATACTCTGCAATGCCAGTGGCATAGTTCT
GTATTTTA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXGTTGCTTCCTATTATTTTTGTTGTT
AATGTTGGCATTCTGTTCTTGTGGCTGTCTTCTTTTAGGTTTGTTGAGGG
ATTACCTTCTTGATTTTTCTAGGGCATGGTTCCCGTCCTTGTATTGGTTT
TTTTCTGTTATTATCTTTTGAAGGGCTGGATTCGTGGAGAGATAATGGGT
GAATTTAGTTTTGTCATGGAATACTTTGGTTTCTCCATCTATGGTAATTG
AGAGTTTGGCTGGGTATAGTAGCCTGGGCTGGAGTTTGTGTTCTCTTAGT
GTCTGTATAATATCTGTCCCGCCTCTTCTGGCTTTCAAAGTCTCTGGTGA
AAAATCTGATTTAATTCTGACAGACTTGCCTTTATATGTTACTGGACCTT
TTCCCCTTACTGCTTTTAGTATTCTATCTTTATTTAGTGCATTTGTTGTT
CTGATTATTATGTGTCGGGAGGAATTTCTTTTCTGGTCCAGTCTATTTGG
AGTTCTGTAGGCTTCTCGTATGTTCATGGGCATCTCTTTCTTTAGATTTG
GGAAGTTTTCTTCAATAATTTTGTTGAAAATGTTTGCTGGTCCTTTGAGT
TGAAGATCTTCATTCTCATCCACTCTTATTATCCATAGGGTTAGGCTTTC
TTACTGGGC

Query= MSMg01no205_f03.b1 MSMg01no205_f03.b1 CHROMAT_FILE:
MSMg01no205_f03.b1 PHD_FILE: MSMg01no205_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:10 2005
         (664 letters)



>mm_chr3_118617902_118618964
          Length = 1063

 Score = 1193 bits (617), Expect = 0.0
 Identities = 650/661 (98%), Gaps = 3/661 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcccttgtcctagtatgacatctcattgtgaggaaacaacatgtgaagatcttccc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcccttgtcctagtatgacatctcattgtgaggaaacaacatgtgaagatcttccc 264

                                                                       
Query: 65  agatttctgggttgagctgtaacccagagaatgatgacagaacctgactgggaaggctgc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agatttctgggttgagctgtaacccagagaatgatgacagaacctgactgggaaggctgc 324

                                                                       
Query: 125 ctaagacaggaacaatggaccatgcaaactaaggcacaaaggaaattcaccctgagataa 184
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctaagacaggaacaatggaccacgcaaactaaggcacaaaggaaattcaccctgagataa 384

                                                                       
Query: 185 agcttacaagaatccacttgaacatttctgatcttcaattctttccccctgcttacaaag 244
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agcttacaagaatccacttggacatttctgatcttcaattctttccccctgcttacaaag 444

                                                                       
Query: 245 aatatggtcagagaggtggagtttccacgatcttggtttcctcagatgctgaatgaacca 304
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 445 aatatggtcagagaggtggagtttccacgttcttggtttcctcagatgctgaatgaacca 504

                                                                       
Query: 305 caatgaacgccttagaatgtatagatcaactcaaaaaa-tgaaaacatgagtcatgatgc 363
           ||||| |||||||||||||||||||||||||| ||||| | ||||||||||| |||||| 
Sbjct: 505 caatgcacgccttagaatgtatagatcaactcgaaaaact-aaaacatgagttatgatgt 563

                                                                       
Query: 364 ttccttagaaggaatgagaatgtagtttgttttcagccataacatgtgttttgggttccc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttccttagaaggaatgagaatgtagtttgttttcagccataacatgtgttttgggttccc 623

                                                                       
Query: 424 tatgccatccataagagaaaaatgttgaggaaaatcttaaggctttttttcccttcattt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 624 tatgccatccataagagaaaaatgttgaggaaaatcttaaggctttttt-cccttcattt 682

                                                                       
Query: 484 gtgtttgtttttcaagcaatatctaatctcctttccacatttagcggcaactttgctaac 543
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 683 gtgtttgtttttcaagcaatatctaatctcctttccacatttagcagcaactttgctaac 742

                                                                       
Query: 544 taccttcagagactatacaaatagatgcagactgtcagtagacatggaatactggaaagg 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 taccttcagagactatacaaatagatgcagactgtcagtagacatggaatactggaaagg 802

                                                                       
Query: 604 tcaacatacattaatccaccaggcatactctgcaatgccagtggcatagttctgtatttt 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tcaacatacattaatccaccaggcatactctgcaatgccagtggcatagttctgtatttt 862

            
Query: 664 a 664
           |
Sbjct: 863 a 863


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1063
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1053
Effective search space:   688662
Effective search space used:   688662
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)