BAC Information

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BAC

Clone NameMSMg01-205G12
Chromosome3 (Build37)
Map Location 67,761,611 - 67,762,265
singlet/doubletsinglet
Overlap geneEG208426
Upstream geneShox2, Rsrc1, Mlf1, Gfm1, Lxn, Rarres1, Mfsd1, LOC667207, Gm412
Downstream geneEG545531, LOC631379, Schip1, Il12a, LOC639530, 1110032F04Rik, Ift80
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-205G12.T7 (MSMg01no205_g12.b1)MSMg01-205G12.TJ (MSMg01no205_g12.g1)
ACCAG389408AG389409
length726730
length of high quality
(start - end)
682 (45 - 726)654 (77 - 730)
definitionCHROMAT_FILE: MSMg01no205_g12.b1 PHD_FILE: MSMg01no205_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:16 2005CHROMAT_FILE: MSMg01no205_g12.g1 PHD_FILE: MSMg01no205_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATCTCCTCCGGGAGAGTAATAAGTGCTCTTAACTGCTGAGCCATCT
CTCTTACCCCTACCTGGATTGATTGATTGATAGCTTGGTTGATCAATTGA
TCGATTGATAAGTCTGTGTGTTTTTATTAATTCACTTATTTATTTAGTGG
TAGTATCATTACTTGTCTGTGCACGTATGGGCACCCAAGCATGTGAGGTG
CGTGTGTCGGCACACCCCATGGCAGTCAGAGGGCAACTTTGTGGGGTTAC
GTCTCTCTTCCCACCTTTACATGAGCTCCAAGGGTCAAACTCAGCTTGCT
GAACTTGTGCAATTGCCTTTATCAGCTGAGTCATCTCACGGGCCCGAGTC
TGCATTTTCTGCATCTCAGATACAATTCTTACTCCTGGTCTAATGGATGG
GGCTTTGAGAACTACTGGCATAAATGGATTTAGCAGAATATCTACCAAAC
AGTTCACAATTCTACAATTGGCTATTCCACCATGGGTAAGCAGCCTTAGA
AATGATACCATGCCATCAGCCATGTGTTTCTGGGACCAATTCAGATATAA
AAATTATGTAGACAAGCCAACCACGAAGACTGCCTATATTAGGTATGTGA
ATATAAACTGAGACAATTATTATGAGTTGGTCTTTGTTTTGTAACGGTAG
TTTTTCTGCTACTCTCCCTAACCCCN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGGAACTTTATTTGTTT
ATTATTTTTGAGGCAGGGTCTCCTGCATCTTGTCTGGTTGGCCTCAAACT
TGCTAAAGTGGAGGAAGAAGGATTTGAACTTGGATTCTCTTTCTGAGTGC
TGGTGATGCTGAGGCCTGCATCACCACTCCTGGTTTATGTAGTGCTGGGA
TCAAGTCAGGGCTTTGTTCATGCCAGGCACTGAGAGATCCCCTCATAATT
TCCCCAAAGCGTAACCATGTGTGAATAAATTTTGAGCTAGTAGGGTTGCA
GCCACGAGTAAGTCTTCCCTTGTTATTGTGTAGCCAGAATGCCGCAAAAC
TTCCATGCCTAAGCCAACTGTTGAGAGTACGTTTCGATTTCTGACTGTGT
TAGCCTGGAAGTGCTTGTCCCAACCTTGTTTCTGAGCATGAACGCCCGCA
AGCCAACATGTTAGTTGAAGCATCAGGGCGATTAGCAGCATGATATCAAA
ACGCTCTGAGCTGCTCGTTCGGCTATGGCGTAGGCCTAGTCCGTAGGCAG
GACTTTTCAAGTCTCGGAAGGTTTCTTCAATCTGCATTCGCTTCGAATAG
ATATTAACAAGTTGTTTGGGTGTTCGAATTTCAACAGGTAAGTTAGTTGC
TAGAACCCATGGCTCCTTTGCCGACGCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no205_g12.b1 MSMg01no205_g12.b1 CHROMAT_FILE:
MSMg01no205_g12.b1 PHD_FILE: MSMg01no205_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:16 2005
         (682 letters)



>mm_chr3_67761611_67762692
          Length = 1082

 Score = 1212 bits (627), Expect = 0.0
 Identities = 648/655 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatctcctccgggagagtaataagtgctcttaactgctgagccatctctcttacc 64
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 655 gaattcatctcctccgggagagtaataagtgctctaaactgctgagccatctctcttacc 596

                                                                       
Query: 65  cctacctggattgattgattgatagcttggttgatcaattgatcgattgataagtctgtg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 cctacctggattgattgattgatagcttggttgatcaattgatcgattgataagtctgtg 536

                                                                       
Query: 125 tgtttttattaattcacttatttatttagtggtagtatcattacttgtctgtgcacgtat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tgtttttattaattcacttatttatttagtggtagtatcattacttgtctgtgcacgtat 476

                                                                       
Query: 185 gggcacccaagcatgtgaggtgcgtgtgtcggcacaccccatggcagtcagagggcaact 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gggcacccaagcatgtgaggtgcgtgtgtcggcacaccccatggcagtcagagggcaact 416

                                                                       
Query: 245 ttgtggggttacgtctctcttcccacctttacatgagctccaagggtcaaactcagcttg 304
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gtgtggggttacgtctctcttcccacctttacatgagctccaagggtcaaactcagcttg 356

                                                                       
Query: 305 ctgaacttgtgcaattgcctttatcagctgagtcatctcacgggcccgagtctgcatttt 364
           |||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 355 ctgagctcgtgcaattgcctttatcagctgagtcatctcatgggcccgagtctgcatttt 296

                                                                       
Query: 365 ctgcatctcagatacaattcttactcctggtctaatggatggggctttgagaactactgg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ctgcatctcagatacaattcttactcctggtctaatggatggggctttgagaactactgg 236

                                                                       
Query: 425 cataaatggatttagcagaatatctaccaaacagttcacaattctacaattggctattcc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 cataaatggatttagcagaatatctaccaaacagttcacaattctacaattggctattcc 176

                                                                       
Query: 485 accatgggtaagcagccttagaaatgataccatgccatcagccatgtgtttctgggacca 544
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 175 accatgggtaagcagccttagaaatgataccatgccatcagtcatgtgtttctgggacca 116

                                                                       
Query: 545 attcagatataaaaattatgtagacaagccaaccacgaagactgcctatattaggtatgt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 attcagatataaaaattatgtagacaagccaaccacgaagactgcctatattaggtatgt 56

                                                                  
Query: 605 gaatataaactgagacaattattatgagttggtctttgttttgtaacggtagttt 659
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 55  gaatataaactgagacaattattaagagttggtctttgttttgtaacggtagttt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space:   720384
Effective search space used:   720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)