BAC Information

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BAC

Clone NameMSMg01-205L03
Chromosome3 (Build37)
Map Location 49,909,212 - 49,909,519
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666230, 4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18
Downstream geneLOC100039628, LOC639469, Slc7a11, EG621304, LOC100039667
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-205L03.T7 (MSMg01no205_l03.b1)MSMg01-205L03.TJ (MSMg01no205_l03.g1)
ACCAG389592AG389593
length740735
length of high quality
(start - end)
---308 (428 - 735)
definitionCHROMAT_FILE: MSMg01no205_l03.b1 PHD_FILE: MSMg01no205_l03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:37 2005CHROMAT_FILE: MSMg01no205_l03.g1 PHD_FILE: MSMg01no205_l03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATGAACGTGCTGTCTCAAACATAATACCGGTGTCAGATACATCATTCTG
AACATGAGACCTATGTACCTGTGCTACTCTTTGCATGAATACAATGCCCT
AGACTATCTTGACATATTTCTGATATTGCTCACTTTAAGAAGAATTAATT
AGTGGACCAACTTACAGAATTGGTGTCATGATCCCGAGCGTGCACCCGAA
ACTCTTGCCCCTGAGATGAGACAGAAGGATTGACTGGCAACCGAGTAGCA
CCAAATATGTTCCAATGAACAGTACGCATAGAAATAGCATCAGACTCTAT
CTTTATAGCATATTTTCTTAATGAGTGTTTATGATGTCATCAACGTATCA
GATCCCGTCCTCACTGCAAACCCCCCATTCCATCCCCTCCTACTGCTACT
ATGACCAGGCTCACCTAGCCAATTACGCACTACCACCTCCACTCTATAAT
CTGCAGACTCACAGCCTCGCACGCTATAGCATACTACCTGAGAGAACCGA
ACGCATCAATATGTATCAAAGATTAGATGCCTTCACAGCTTATTGATACG
GAAACCTTCAAATCACTACGTATAGTGAATGTGATAAGAATTCCTTAGAC
CCCTCAACTATATCCTTCTAGATCGAAGAGAGGATATATGGTTCAATGCA
TACCGGTTAACGTCCAACCATAAACAGAATAACATGGTAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTCCCGCGAAATTCTCGGGGTACTGATTAGTTTATATT
GTTGTTCCTCCTATGGTGCTCCCAACCCCTTCAGCTCCCTGGGTACTTTC
TCTATCTCCTTCATTGTGGACCCTGTGCTTTGTCCAATGGATGGCTATGA
GCATCCACTTTTGTATTTTTCAGGCACTGGCAGATTCAAACTGAAGCAAC
AGTAGATTGATTTTAGTAAGCTGGCACACTGGAGTGGCCATATCTAATGG
GAGCAACAACAGTCATGATTTCAGAACAGCTGCTTGACAAAGATCCAACA
AAGCCGATTTATTCGATGCCCCACCCTTGTATAACCTTTCACTTTTGGTC
TTTCTCTCCAAGCGCTTCATGCGAAGGGAGCTTTTAATATTTGTAAAACG
TGACGATATTAGACTGATGGGAAATGCATGTCTTCTCTCAGAAGTACTGC
TTCTAAGCTGCCCCAAGAAAGTCCTGAGCCTGTTATCCCTCCAACTTTTA
CAGAGATACCCTTATCTGGCTGTACTTGAAGGTCTTCCTTGTGCCCTGGA
GATTCTGACTCACATGAAAATGGGAGAGGTCTTATGAGACGCCAGCTCCA
AAATACTGTCTTGGAACATCTGCTCCTGCACTTATTCAGGAACCAGACAA
TTAGAAGAAAGTTAACTTCAAAAGGTAAGCAGGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no205_l03.g1 MSMg01no205_l03.g1 CHROMAT_FILE:
MSMg01no205_l03.g1 PHD_FILE: MSMg01no205_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:37 2005
         (308 letters)



>mm_chr3_49909012_49909719
          Length = 708

 Score =  596 bits (308), Expect = e-175
 Identities = 308/308 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagcttttaatatttgtaaaacgtgacgatattagactgatgggaaatgcatgtcttctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gagcttttaatatttgtaaaacgtgacgatattagactgatgggaaatgcatgtcttctc 449

                                                                       
Query: 61  tcagaagtactgcttctaagctgccccaagaaagtcctgagcctgttatccctccaactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tcagaagtactgcttctaagctgccccaagaaagtcctgagcctgttatccctccaactt 389

                                                                       
Query: 121 ttacagagatacccttatctggctgtacttgaaggtcttccttgtgccctggagattctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ttacagagatacccttatctggctgtacttgaaggtcttccttgtgccctggagattctg 329

                                                                       
Query: 181 actcacatgaaaatgggagaggtcttatgagacgccagctccaaaatactgtcttggaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 actcacatgaaaatgggagaggtcttatgagacgccagctccaaaatactgtcttggaac 269

                                                                       
Query: 241 atctgctcctgcacttattcaggaaccagacaattagaagaaagttaacttcaaaaggta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 atctgctcctgcacttattcaggaaccagacaattagaagaaagttaacttcaaaaggta 209

                   
Query: 301 agcaggat 308
           ||||||||
Sbjct: 208 agcaggat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space:   209001
Effective search space used:   209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)