BAC Information

Click to search

BAC

Clone NameMSMg01-205M16
Chromosome3 (Build37)
Map Location 41,533,151 - 41,533,844
singlet/doubletsinglet
Overlap geneSclt1
Upstream geneHspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2, EG666004, Ppia-ps3_337.1, LOC100039115, Phf17
Downstream geneD3Ertd751e, LOC666031, LOC100039204
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-205M16.T7 (MSMg01no205_m16.b1)MSMg01-205M16.TJ (MSMg01no205_m16.g1)
ACCAG389650AG389651
length740743
length of high quality
(start - end)		696 (45 - 740)667 (77 - 743)
definitionCHROMAT_FILE: MSMg01no205_m16.b1 PHD_FILE: MSMg01no205_m16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:44 2005CHROMAT_FILE: MSMg01no205_m16.g1 PHD_FILE: MSMg01no205_m16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGCATATACCTTGACTTGCTACTCCTAAAACTAAAAATTACATGAC
TCACACAAAAAAGCCTTTTGCTGGTTTTAATTGCCCATCAGAAGGAAAAA
AAGATATTTTTGTGGTTGGCTTAAGCTTAAAGGGCAAAAGACTATAAAAA
ATATATCATGAAGAATGGGAAATAAATTAAGAATTGTCTTATGCCAGAGC
CAAACAGAGAATTTTCAACAGAGGAATCTTGAATGGCTGACAAACACTTA
AAGAAATGTTCAAAGTCCTTTGTCATCAGGGAAATGCAAATCCAAACAAC
CCTGAGGTTCCATCTTACACCCAGTGGAAGTACATAAGGGGGTAGAGCTA
GGAGGGATCAATAACAACAAAGTATGCAGAAAAACCCCTTATGGAAACCC
ATTATTCTGTAAGCCAATTTTAAAAATAAAAAGTCTTTTGAAAAAGAGTA
TTTATATTGTTATCCTGGTATCAGAAAATTTGGGAGGAAATGTAAAAAAC
ATTTCAATTCAAAGAAACACATTATAAATATTAGTTATACTCTAAAAACG
TGGTTACTTTAAACGTGTAACAACCCTATAGTATAGTATGCTTTAGCTTT
CCATGAGCCTAATCTCAGAAGCCCTGAGACTGAGATCTGTTTACATAGAC
AGTGTCTTGAGTTTATTTCCATTATTCTTAAAATAAACTT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCTAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGAAACTCACACAATATATACTCACTGATAA
GTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTG
CTAAACACATGAAACTCAAGAAGAATGAAGACTGAAGTGTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no205_m16.b1 MSMg01no205_m16.b1 CHROMAT_FILE:
MSMg01no205_m16.b1 PHD_FILE: MSMg01no205_m16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:44 2005
         (696 letters)



>mm_chr3_41532949_41534044
          Length = 1096

 Score = 1210 bits (626), Expect = 0.0
 Identities = 677/694 (97%), Gaps = 2/694 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagcatatacctt-gacttgctactcctaaaactaaaaattacatgactcacaca 63
           |||||||||| | || || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcagcagaaacttttgacttgctactcctaaaactaaaaattacatgactcacaca 262

                                                                       
Query: 64  aaaaagccttttgctggtttt-aattgcccatcagaaggaaaaaaagatatttttgtggt 122
           ||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aaaaagccttttgttgttttttaattgcccatcagaaggaaaaaaagatatttttgtggt 322

                                                                       
Query: 123 tggcttaagcttaaagggcaaaagactataaaaaatatatcatgaagaatgggaaataaa 182
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 323 tggcttaagcttaaagggcaaaagactataaaagatatatcatgaagaatgggaaataaa 382

                                                                       
Query: 183 ttaagaattgtcttatgccagagccaaacagagaattttcaacagaggaatcttgaatgg 242
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 383 ttaagaattgtcttatgccagagccaaacagagatttttcaacagaggaatcttgaatgg 442

                                                                       
Query: 243 ctgacaaacacttaaagaaatgttcaaagtcctttgtcatcagggaaatgcaaatccaaa 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctgacaaacacttaaagaaatgttcaaagtcctttgtcatcagggaaatgcaaatccaaa 502

                                                                       
Query: 303 caaccctgaggttccatcttacacccagtggaagtacataagggggtagagctaggaggg 362
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 caaccctgacattccatcttacacccagtggaagtacataagggggtagagctaggaggg 562

                                                                       
Query: 363 atcaataacaacaaagtatgcagaaaaaccccttatggaaacccattattctgtaagcca 422
           |||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 563 atcaataaaaacaaggtatgcaggaaaaccccttatggaaacccattattctgtaagcca 622

                                                                       
Query: 423 attttaaaaataaaaagtcttttgaaaaagagtatttatattgttatcctggtatcagaa 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 attttaaaaataaaaagtcttttgaaaaagagtatttatattgttatcctggtatcagaa 682

                                                                       
Query: 483 aatttgggaggaaatgtaaaaaacatttcaattcaaagaaacacattataaatattagtt 542
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aatttgggaggaaatgtaaaacacatttcaattcaaagaaacacattataaatattagtt 742

                                                                       
Query: 543 atactctaaaaacgtggttactttaaacgtgtaacaaccctatagtatagtatgctttag 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 atactctaaaaacgtggttactttaaacgtgtaacaaccctatagtatagtatgctttag 802

                                                                       
Query: 603 ctttccatgagcctaatctcagaagccctgagactgagatctgtttacatagacagtgtc 662
           |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 803 cttttcatgagcctaatctcagaagcccggagactgagatctgtttacatagacagtgtc 862

                                             
Query: 663 ttgagtttatttccattattcttaaaataaactt 696
           ||||||||||||||||||||||||||||||||||
Sbjct: 863 ttgagtttatttccattattcttaaaataaactt 896


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1096
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1086
Effective search space:   744996
Effective search space used:   744996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |