BAC Information

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BAC

Clone NameMSMg01-206F07
Chromosome3 (Build37)
Map Location 154,922,717 - 154,923,059
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc44a5, Lhx8, LOC100040810, LOC100040829, Tyw3, Cryz, BC007180, Tnni3k, Fpgt, Lrrc44
Downstream geneEG383956, Scp2-ps1, EG668902, LOC624519
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-206F07.T7 (MSMg01no206_f07.b1)MSMg01-206F07.TJ (MSMg01no206_f07.g1)
ACCAG389984AG389985
length724727
length of high quality
(start - end)
583 (47 - 629)343 (385 - 727)
definitionCHROMAT_FILE: MSMg01no206_f07.b1 PHD_FILE: MSMg01no206_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:28 2005CHROMAT_FILE: MSMg01no206_f07.g1 PHD_FILE: MSMg01no206_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTTAGCTCTGAGCCCCATTTTTAATGAGGTTATTTGATTT
TCTGGAGTCCACCTTCTTGAGTCCTTTATATATATTAGATATTAGTCTCC
TATCTGATTTAGGATAGGTAATGATCCTTTCCCAATCTGTTGGTGACCTT
TTTGTCTTATTGACAGTGTCTTTTGTCTTATAGAAGCTTTGCAGTTTTAT
GAGGTCCCATTTGTCGATTTTTGATCTTACAGCACAAGCCATTGCTATTC
TATTCAGGAAGTTTTCCTCTGTGCCCTTATCTTAGAGGCTTTCCCCCACT
TTCTCCTCTATAAGTTTCACTGTCTCTGGTTTTATTTGGAGTTCCTTGAT
CCACTTAGTTTTGACCCCACCACAAGGAGATAGGAATGGATCAATTTGCA
TTCTTCTACATGATAACTGCCAGTTGTGCTAGCACCATTTGTTGAAAATG
CTGTCTTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGT
GACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGG
TCTACTTGTCTGTCCCAATACCAGTACCATGCAGTTTTTATCACAATTGC
TCTGTAGTACAGCTTTATGTCAGGCATGGTGATTCCATCAGCTGATGCTG
TTGGAATAAGAGGAACACTCCTCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAAGTTTCATAGCAAGCTGAGAAA
GTTCAGCAATTGAACTGTATATCTTACCTCTTAAAGTGGGTCTGTACTCA
GTGCCTTGGAGTAAGTGTGAACTTGGATAGTTTCCATCAGCTCAAGTAGG
ATCACTAGAAAATGGGAATATACCAGGATCTTGTTGATAAATTCAGGGTT
GTTAGGAGGACTAAATATAAAAAACAAAATTGAGCTATGTTGTGAGCTGT
GTCAATAGAAAGTTATTATTTTGAACTATATTTTCTGTGTATCTATTTCT
CCAGTCTCCTTTAATTTGTCTAACATGACTCTAAATTAATATATTCTGTT
TGGGAATAATGATATACTCACGAATGTACTCTTACAATGCTTATGCTTTT
TGCCATAATTAGATTGACATTTATGTTGAAATATGTATTTTGCATTATCT
GCTAAGTACTAAAACATGTAAAGATATGGATTGTACACCTCAGTAACATT
GCCTTTGGATAATTACCACACAAGTTTTAATCATGAGTGAATAGATGGAT
ATTTGTTATGGAACATATCAGCTATAAGATAGATCCAGTCCTGTTTCTTC
CAAAATACATGCAAACACTGACTCTAAAGACTGCAACCAACACTGGGCAG
CAGAAGCCAGCCTCTGAATTAACGGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no206_f07.g1 MSMg01no206_f07.g1 CHROMAT_FILE:
MSMg01no206_f07.g1 PHD_FILE: MSMg01no206_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:28 2005
         (343 letters)



>mm_chr3_154922517_154923259
          Length = 743

 Score =  625 bits (323), Expect = 0.0
 Identities = 338/343 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaatatattctgtttgggaataatgatatactcacgaatgtactcttacaatgcttat 60
           ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 201 attaatatattctgtttgggagtaatgatatactcatgaatgtactcttacaatgcttat 260

                                                                       
Query: 61  gctttttgccataattagattgacatttatgttgaaatatgtattttgcattatctgcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctttttgccataattagattgacatttatgttgaaatatgtattttgcattatctgcta 320

                                                                       
Query: 121 agtactaaaacatgtaaagatatggattgtacacctcagtaacattgcctttggataatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtactaaaacatgtaaagatatggattgtacacctcagtaacattgcctttggataatt 380

                                                                       
Query: 181 accacacaagttttaatcatgagtgaatagatggatatttgttatggaacatatcagcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accacacaagttttaatcatgagtgaatagatggatatttgttatggaacatatcagcta 440

                                                                       
Query: 241 taagatagatccagtcctgtttcttccaaaatacatgcaaacactgactctaaagactgc 300
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 taagatagatccagtcctgtttctcccaaaatacatgcaaacactgactctaaagactgc 500

                                                      
Query: 301 aaccaacactgggcagcagaagccagcctctgaattaacggat 343
           ||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 501 aaccagcactgggcagcagaagccagcctctgaataaacggat 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)