BAC Information

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BAC

Clone NameMSMg01-206J22
Chromosome3 (Build37)
Map Location 65,158,089 - 65,158,322
singlet/doubletsinglet
Overlap geneKcnab1
Upstream gene4930518C23Rik, EG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918, 4933425M15Rik, LOC670110
Downstream geneSsr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866, Ccnl1, LOC625048, Veph1, Tpi-rs2, Ptx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-206J22.T7 (MSMg01no206_j22.b1)MSMg01-206J22.TJ (MSMg01no206_j22.g1)
ACCAG390169AG390170
length720774
length of high quality
(start - end)
244 (134 - 377)236 (130 - 365)
definitionCHROMAT_FILE: MSMg01no206_j22.b1 PHD_FILE: MSMg01no206_j22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:51 2005CHROMAT_FILE: MSMg01no206_j22.g1 PHD_FILE: MSMg01no206_j22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATGGTCCTGCTTGCGGGGCCTCCCCATGCTGTTCCATCAT
CCTAAGATGCTGTTCTCCCATGTTTCGCACGGATAGCTTGTTTCAATGCT
TCAACATAATACATGACGGGAAGTGACACAATCCTAGCCCTGACTCCATA
GAGCTTCCCTTTCATTTCCTATCTGGAACTGCTTATATTTTTCTATAACA
CTCTATATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTT
TTGGTTTTTCGATACAGGGCTTCTCTGTATAGCGCTGGCTGTCCTATATT
TTAAAATCACTTCTTTATTTCTCCACCCTTGCCATCCAACCCTAAACTCC
CCAAGTCTAGAAATTCTATACCCCATGTGTCCAACGAGTAAATGAATGAG
TCTTGGAAGACTCACAATTTCCACCTTAACTGCTCTGGTTCAGGCTTCGA
TAACTTCACACAGCCTGGCCACAAGGCCTCTCTGTCTTCTTCACCCTGTC
TGTAGAGAACAGATGGGGGAGCCTTCCAATTCAGATTGCTCTCTGTGAAC
CCCTTCAGTTTTGTACACCTCGTTAAGTCCAGCTCCCAGAACAACAGGTA
CCTGCAGAACATGGCGACTGTATGAGTTCTTAGCTTTGTTAGAAACCGGA
TTATGATTATGAATGCTTTC
NAATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAGAGTAGCTAGGAGCA
GACACTATGGAGAGCTGGGACTGTTAGCCCCTGAGACCACAGGAGGTAAA
AGACTGCAAAGATAGATTGCTTAAGAACTGAAAGGACTGGCCACAGAAAT
AGTTCTAATAGTCATTAGACACTGTTGGGGTTTTGTCTTTTGCTGTGTAT
TATTATGATAAGTGCAGGCCCCCAAAATCTGGTTGCCCCCAGAGAGTAAA
CCCAAGTGATGCTATGAGACCTTGCCTCCAGGTTATTTCTGATTGGTAAA
TAAAGATGCCAATAGCTTTTATTTGCCCTCACCACACATAGGCAGGATTT
AGGATTTCCAGGGCTTGGGGCCCCCCCCTCTCATATAAGCCCACATATTG
ATGGAGATACTTTTCTCCCTGGCCAAGTTGATTTTTGTACCCCGCCTTCT
TTGCTTTTTTCTACTTTTGTCCCCCTCCACCCCCTCTTCCCTTATCTTTT
TCTCCTTTTTACCTCGCATATTTCCTACTTTCACCCCCGTTTTTCCCTCC
CTTCCCCCTCTTGTTATTTTTCCCCTTTTATTCTTTTTTCTTCCTATTCT
CTCCCCATTTCCTTTCTTCTTTTTCCCCCTTATTTTCCTTCTTTTATCCT
TCCTCATTTTTTTTCCCCCTTTTTCCGCCCCCCCTCTTTTTTTTTTTTCT
TCCTCCCCTCCCCCTGCTTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no206_j22.b1 MSMg01no206_j22.b1 CHROMAT_FILE:
MSMg01no206_j22.b1 PHD_FILE: MSMg01no206_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:51 2005
         (244 letters)



>mm_chr3_65157889_65158532
          Length = 644

 Score =  422 bits (218), Expect = e-122
 Identities = 233/244 (95%), Gaps = 10/244 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagcttgtttcaatgcttcaacataatacatgacgggaagtgacacaatcctagccctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagcttgtttcaatgcttcaacataatacatgacgggaagtgacacaatcctagccctga 260

                                                                       
Query: 61  ctccatagagcttccctttcatttcctatctggaactgcttatatttttctataacactc 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctccatagagcttccatttcatttcctatctggaactgcttatatttttctataacactc 320

                                                                       
Query: 121 tatattttattttattttattttattttattttattttattttatttttggtttttcgat 180
           ||||||||||||||||||||||||||||||||||||||          ||||||||||||
Sbjct: 321 tatattttattttattttattttattttattttatttt----------tggtttttcgat 370

                                                                       
Query: 181 acagggcttctctgtatagcgctggctgtcctatattttaaaatcacttctttatttctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 acagggcttctctgtatagcgctggctgtcctatattttaaaatcacttctttatttctc 430

               
Query: 241 cacc 244
           ||||
Sbjct: 431 cacc 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)