CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCTATCAAGACAACAATATCCTTTAAATCACATTTCATTCTTAGAC
AAAAGTTGGAATGCCATTCTACGCAACAATAAAACCTTTTCTGTTACTTT
GATGGAAAGGTCCGTGCAGCTTATAAATCAAGATACTAACCTAGCGCATT
CAGCAAACCACATACCCTTTTCATCCATCCCACGTGCAGTTCAAGGAGAA
CAAAAAGCCTTCAATCTACAAGAGCCACAGTACAGTAAGGTAACATGCTG
GTGCCTCATTCGCCTGCTTAGACTTTCCATCTCAGTTGCCAGGCTGCAAA
ATCTATAAAGAGAGCTGCCTTGGGAGTCTCTGGCTCCTATTGTCAGCACT
TGATAACTTTCATCCCAATCCTACTTCCATTCTCCTTTCTGCTTCTAGAG
CTGCATTCATTATCTGTCATTCCAAGTTGTCAGGTGAGGGACCAAACCAG
TCTGTGACTAAGGCAGTGCCAGCAGTTACCTTCATATTGCATGCAAAAGA
CAACAGATATTTAACTACAAGGACTTTAAGTCCTGGGACTGATAGTGTTT
TTTGCCTATTTTCTTGATCTTGGCAGCTGTTTAGTTCTTGTGCTACAGCC
ATTTAGCCACTGTTACTTTAACTAGGAATCAGGTGGTAGAGGATTCCCTG
CAATATCTGA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGCTCCCCATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAG
ATCAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGAGGATC
CAGCAATACCTCTCTTGGGCATATATCCAGAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACCACGCTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAGA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTGGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAA
GTGGATATTAGCCCAAAACCTAAGATACCCAAGATATAAGATACAATTTC
CTAAACACATGAA

Query= MSMg01no206_l05.b1 MSMg01no206_l05.b1 CHROMAT_FILE:
MSMg01no206_l05.b1 PHD_FILE: MSMg01no206_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:57 2005
         (666 letters)



>mm_chr3_76830419_76831485
          Length = 1067

 Score = 1176 bits (608), Expect = 0.0
 Identities = 650/664 (97%), Gaps = 3/664 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccctatcaagacaacaatatcctttaaatcacatttcattcttagacaaaagttg 64
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccctatcaagacagcaatatcctttaaatcacatttcattcttagacaaaagttg 264

                                                                       
Query: 65  gaatgccattctacgcaacaataaaaccttttctgttactttgatggaaaggtccgtgca 124
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaatgccattctaagcaacaataaaaccttttctgttactttgatggaaaggtccgtgca 324

                                                                       
Query: 125 gcttataaatcaagatactaacctagcgcattcagcaaaccacatacccttttcatccat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcttataaatcaagatactaacctagcgcattcagcaaaccacatacccttttcatccat 384

                                                                       
Query: 185 cccacgtgcagttcaaggagaacaaaaagccttcaatctacaagagccacagtacagtaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cccacgtgcagttcaaggagaacaaaaagccttcaatctacaagagccacagtacagtaa 444

                                                                       
Query: 245 ggtaacatgctggtgcctcattcgcctgcttagactttccatctcagttgccaggctgca 304
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggtaacatgctggtgcctcattcacctgcttagactttccatctcagttgccaggctgca 504

                                                                       
Query: 305 aaatctataaagagagctgccttgggagtctctggctcctattgtcagcacttgataact 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaatctataaagagagctgccttgggagtctctggctcctattgtcagcacttgataact 564

                                                                       
Query: 365 ttcatcccaatcctacttccattctcctttctgcttctagagctgcattcattatctgtc 424
           ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 565 ttcattcaaatcctacttccattctcctttctgcttctagagctgcattcattatctctc 624

                                                                       
Query: 425 attccaagttgtcaggtgagggaccaaaccagtctgtgactaaggcagtgccagcag-tt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||
Sbjct: 625 attccaagttgtcaggtgagggaccaaaccagtctgtgactaaggcagcaccagcagatt 684

                                                                       
Query: 484 accttcatattgcatgcaaaagacaacagatatttaactacaaggactttaagtcctggg 543
            ||||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 685 -ccttcatatcggatgcaaaagacaacagatatttaactacaaggactttaagttctggg 743

                                                                       
Query: 544 actgatagtgtttttt-gcctattttcttgatcttggcagctgtttagttcttgtgctac 602
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 actgatagtgtttttttgcctattttcttgatcttggcagctgtttagttcttgtgctac 803

                                                                       
Query: 603 agccatttagccactgttactttaactaggaatcaggtggtagaggattccctgcaatat 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 agccatttagccactgttactttaactaggaatcaggtggtagaggattccctgcaatat 863

               
Query: 663 ctga 666
           ||||
Sbjct: 864 ctga 867


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1067
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1057
Effective search space:   693392
Effective search space used:   693392
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)