CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAAGCTTTCTCTCAGAACAATGACACTATAAGAGCAAATTCAGAAA
TGTTATTCCTACAACACATAGACCTCTGTGCTCATTTATGGTTTCAGGGA
GAAAACAGGCCACTTCAAATGGCCAGTTCCCTAGAAATAGTAAACAAATA
TCTTGCTATCAAAATTGATTATCTATAATAACTAAGTTATCTAGAATGGT
CTATACTTTAGAATGTTATAAACAAAATGCTTTTAAGGAGGGCTAAAGGC
TTCCCCATCCAGTACACATAGTACACAAGCCATCTATTACCACACTTGAC
TTTTCTCATGCACTTTCTGATGGGTAAGTATCATTTATTTTTCTTTTAGC
CAACAAAACGAATGCACAGGCCATGCCCAGCAAATGCTACAGCCCAGACT
AAAACACTGATGGATCTCACACTGAGGTTCCCACCATTTCCACTGAGCCC
AAACTTCACAGTATGTTGCATCTGCGTCTTACTAGAAATCAGTCTGAGCA
GCACGCCATCAACAGAGCGCAGCACTTGCGGTGAGAAATGACAAAGCCTT
ACTTCTGGGTTAAGCTTTGGGTTGATATTTTTAAAATAGGAGACCACAAA
ACAAAAACAAACTGCACATTCTTATGTTTTTAGAGTTTAATTTAGTTGTA
CATTANAATGTCTATAAACAGTAAAAAGATATCT

TCAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTCACAAGTCCTTTCACATGCTTGC
TTTGTCAAAACATCCTTTCACCTGCGTCTGCTTCAGCAAAATGTTCATCA
CTTATGTGCTTTAGCAAAACATCCTTTCACCTGTGTCTGCTTCAGTGAAA
CATTTGCTTCAGTGAAACCTTCTTTGACATAACTGACTTTCCAAAGAAAC
CAGAAATTTCCACTTTAGGTTTCTGTGCTTAAAATGAAATGAAAAGAAAA
ATGGTTCTGGGCAATTGGACTGGTGTGCCATTTACCCCTGACAAGCATTA
TGGTTTCTTGATGAATTTGATTCGCCACCGCTATCAAAGATCCATGAAGA
TAATGGAACCTAAAACACCCCAACTTCCTGATAACCTTGCTTTTCCACTC
CCTCTGGTGGCTAGAAGGGAGGTTAAAGCATTTAAGAACCCATATTAAAA
GTAGGTTTTGAAAAATTGTAAGCCAGCTTTAAGTAAATGTTTTCCTTTTT
AAGAATTGCTGTGGTCATGGTGTCTCTTCAAAGCAGAACTCTAAGACATA
CAGTCACTCTAAGACAGGCACATACACACATACACTCAAACACACACACA
CACACACATATATATAAAATGTATATGCAGGACTGGGAATTATACCCATT
GTTTCATTTATACCCCACATTGAGCTGCTTCATTAG

Query= MSMg01no206_l11.b1 MSMg01no206_l11.b1 CHROMAT_FILE:
MSMg01no206_l11.b1 PHD_FILE: MSMg01no206_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:58 2005
         (690 letters)



>mm_chr3_55799596_55800685
          Length = 1090

 Score = 1151 bits (595), Expect = 0.0
 Identities = 661/690 (95%), Gaps = 15/690 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaagctttc-tctcagaacaatgacactataagagcaaattcagaaatgttatt 63
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaagctttcttc-cagaacaatgacactataagagcaaattcagaaatgttatt 263

                                                                       
Query: 64  cctacaacacatagacctctgtgctcatttatggtttcagggagaaaacaggccacttca 123
           |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 264 cctacaacacatagacttctgtgctcatttatggtttcagggaggaaacaggccacttca 323

                                                                       
Query: 124 aatggccagttccctagaaatagtaaacaaatatcttgctatcaaaattgattatctata 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aatggccagttccctagaaatagtaaacaaatatcttgctatcaaaattgattatctata 383

                                                                       
Query: 184 ataactaagttatctagaatggtctatactttagaatgttataaacaaaatgcttttaag 243
           |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 384 ataactaagttatctagaatggcctatactttagagtgttataaacaaaatgcttttaag 443

                                                                       
Query: 244 gagggctaaaggcttccccatccagtacacatagtacacaagccatctattaccacactt 303
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gagggctaaaggcttccctatccagtacacatagtacacaagccatctattaccacactt 503

                                                                       
Query: 304 gacttttctcatgcactttctgatgggtaagtatcatttatttttcttttagccaacaaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gacttttctcatgcactttctgatgggtaagtatcatttatttttcttttagccaacaaa 563

                                                                       
Query: 364 acgaatgcacaggccatgcccagcaaatgctacagcccagactaaaacactgatggatct 423
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 acgaatgcagaggccatgcccagcaaatgctacagcccagactaaaacactgatggatct 623

                                                                       
Query: 424 cacactgaggttcccaccatttccactgagcccaaacttcacagtatgttgcatctgcgt 483
           |||||||||||||||||||| ||||||||| |||||||||||      ||    ||||||
Sbjct: 624 cacactgaggttcccaccatctccactgagtccaaacttcac------tt----ctgcgt 673

                                                                       
Query: 484 cttactagaaatcagtctgagcagcacgccatcaacagagcgcagcacttgcggtgagaa 543
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 ctcactagaaatcagtctgagcagcacgccatcaacagagcgcagcacttgcggtgagaa 733

                                                                       
Query: 544 atgacaaagccttacttctgggttaagctttgggttgatatttttaaaataggagaccac 603
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 734 atgacaaagccttacttctgggttaagctttgggttgttatttttaaaataggagaccac 793

                                                                       
Query: 604 aaaacaaaaacaaactgcacattctt---atgtttttagagtttaatttagttgtacatt 660
           ||||||||||||||||||||||||||   |||||||||||||||||| |||||| |||||
Sbjct: 794 aaaacaaaaacaaactgcacattcttcttatgtttttagagtttaatatagttgcacatt 853

                                         
Query: 661 anaatgtctataaacagtaaaaagatatct 690
           | ||||||||||||||| ||||||||||||
Sbjct: 854 aaaatgtctataaacagcaaaaagatatct 883


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space:   734400
Effective search space used:   734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)