BAC Information

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BAC

Clone NameMSMg01-207M05
Chromosome3 (Build37)
Map Location 44,322,139 - 44,322,553
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039264
Downstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-207M05.T7 (MSMg01no207_m05.b1)MSMg01-207M05.TJ (MSMg01no207_m05.g1)
ACCAG390880AG390881
length1,2021,168
length of high quality
(start - end)		222 (82 - 303)426 (78 - 503)
definitionCHROMAT_FILE: MSMg01no207_m05.b1 PHD_FILE: MSMg01no207_m05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:31:06 2005CHROMAT_FILE: MSMg01no207_m05.g1 PHD_FILE: MSMg01no207_m05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:31:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTTTTTTTNNNATCATTGGGCCTAACACTCCTATAGGGAGAGGATCCG
CGGAATTCCAATCTTTCCAGACTTCTTATTGAAAGGGTGTTGGATATTGT
CAAATGCTTTCTCTGCTTCTATCTAGATGATCATGTGCCTTTTGTCTTTG
AGTTTGTTTATATACTGGATTACATTGATGGATTTCCCTATATTGATCCA
TCCCTGCTTTGCTTCGATGAAAACTACTTGGTCAGGATGGATGATTGTTT
TGATGTGTTCTTGGATTTGGTTAGAGAGAACTTTATTGAGGATTTTTGTA
TNAATATTNATAAGGGAAATTGGTNTGAATTTTTTTGTNTTTGTTGGGAN
TTTTTGTGGTTTAGGTATTAGAGTAATTGTGGTTTTTTATAATGAATTGT
GTTTTTTTTTTTGAGANANAAANGAGGGGAAAAGGATGAGAAAAAAAAAA
AAGGAATTTTTTTTTTATTGTTTTATGTAATTTTTTTTTATAAAAAAAAA
AATTATTATTATTTTTATTTTTTATATTTTTTATTTTTTTTTTTTTTTTG
TTTTTTTATTTTTTTTTTTTTAGATATTTATTTTTTATTTATTTATTATT
TATTTTATATATTTATTTTTTTTTTTTTTTTATTTTTTTTATTTTAAATA
NTTATGAAATTATATTTTATTTTTATTTTTTATTATATTTTTTTTTTTTT
TTTATTTTATTTTTTTTATATATATTTTTTTATATTTTATTTTTTTATTT
TTATTTTTAATTTATTATTTTTATTTTTTTATTATAATTTTTTATAATGA
TTTTTTTTTTTTTTTTTTTTTTTTAATTATTTTTTAATTTTATTATTTTT
AATAATTATAAATTATTATTTTATTTTTTATTTTNTTTTTTTNTAATATT
TTTTTTTTTTTTTTTTATATTGATATTTTTAATTTTATATATTATTATTT
ATTTTTTTTTTTTTTTTATTATTTTTNTTTTAATTTTTATTTTTTTTTTT
TTTATTTATTTTAATTTTATATTTTTTAATTATTTATATTTTATTTTAAT
TTTTTATTTTTTTTTTTATTTTATTTTTTTTTTTTTTTATTTTATTAATT
TTTTTTTATTTTTTTTTATTATTTTTTATTTATATTTATTTTTTTTTTTA
TATATAATTTTTATATTTATTTTTAATTAATAATATTTTTAGTTTTATTT
TT

NNCCCTCTATTTNNNTATCATGNAGNCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTCTTGAGTAAAATTGCTATT
TTAAACAATAGTCACATGCTCGATTCATAAAGATACCAACAAATTATTTT
GAATATTGCTGAGACCTCTTTACATCCAATGAATACAACATTCACGGTGA
CTGTTTTCTCTACATGCCTGTCATGATTGTCAAGATTGTCTATGCTTATT
ATTAATACTTATTTTTGCATAGAGATGAAATAGAGTCTTGTTACATGTTT
ATGCATATTTTCTCTTACATAAGGATGTTGGGTAGTAGTACATGCTCTTT
TGGCCACATTTATTCCATAGTTTTTGAAATATCTGTTTGGGTTTTGGCTC
AACCATAGTGAGTACTGAAATTAACTCTCTAATAACAATGGGTAAACTAT
GAAGGCATATATACTAGTAGAACTGTACAGAATGAGCAGGTTTCGCTTAT
ATATTTAGGAGTGTGTGTGCTTGTGTGTGCTTGTGTGTGTGTGTGTGTGN
NNNNNNNNNNNNNTNNNTNTTNTNTNTTTTNTTTTTTTTTTTNTTTTTTT
TNTNTTTTTTTNNTTTTTTTTTNTTTTTTTTTTTTNTNTTTNTTTTTTTT
TTTTTTTTNTTNNNNTTTTNTTTTTTTTTTTTTTTTTTNTTTTTTTTTTT
TTTTTTNTTNTTTNTNNTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTT
TTTTNTTTTTNNNNNTTTNTTTTTTTTTTTTTTTTTTTTNNTNTTTTTTT
TTTTTTTTNTTTTNTTTTTTTTTTTTTTTTTTTTTTTNTTTTTNTTTTTT
NTTTTTTTTTTTTNTTNNTTTTTTTNTTTTTTTTNTTTTTTTTTTTTTNT
TTTTTTNTTTTTTTTTTTTTTTTNNTTNTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTNNTTTTNTTTTTTTTTTTTTTTTNNTTTTTTNTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTNNTTTTTTNTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTNNTTTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no207_m05.g1 MSMg01no207_m05.g1 CHROMAT_FILE:
MSMg01no207_m05.g1 PHD_FILE: MSMg01no207_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:31:06 2005
         (426 letters)



>mm_chr3_44321938_44322763
          Length = 826

 Score =  710 bits (367), Expect = 0.0
 Identities = 406/425 (95%), Gaps = 10/425 (2%)
 Strand = Plus / Plus

                                                                       
Query: 2   tctcttgagtaaaattgctattttaaacaatagtcacatgctcgattcataaagatacca 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tctcttgagtaaaattgctattttaaacaatagtcacatgctcgattcataaagatacca 261

                                                                       
Query: 62  acaaattattttgaatattgctgagacctctttacatccaatgaatacaacattcacggt 121
           | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 262 ataaattattttgaatattgctgagacctctttacatccaatgaatacaacattcaaggt 321

                                                                       
Query: 122 gactgttttctctacatgcctgtcatgattgtcaagattgtctatgcttattattaatac 181
           |||||||||||||||||| ||||||||||||          ||||| |||||||||||||
Sbjct: 322 gactgttttctctacatgtctgtcatgattg----------ctatggttattattaatac 371

                                                                       
Query: 182 ttatttttgcatagagatgaaatagagtcttgttacatgtttatgcatattttctcttac 241
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ttattcttgcatagagatgaaatagagtcttgttacatgtttatgcatattttctcttac 431

                                                                       
Query: 242 ataaggatgttgggtagtagtacatgctcttttggccacatttattccatagtttttgaa 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 432 ataaggatgttgggtagtagtacatgctcttttggccacatttattccatagtttttaaa 491

                                                                       
Query: 302 atatctgtttgggttttggctcaaccatagtgagtactgaaattaactctctaataacaa 361
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 492 atatctgtttgggttttggctcaaccatagtgagtactgaaattaactctctaataccag 551

                                                                       
Query: 362 tgggtaaactatgaaggcatatatactagtagaactgtacagaatgagcaggtttcgctt 421
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 552 tgggtaaactatgaaggcatatatacaagtagaactgtacagaatgagcaggtttcgctt 611

                
Query: 422 atata 426
           |||||
Sbjct: 612 atata 616


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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