CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTAAGATATTTTTTATTCCCTAGAGGAAAAAAAAATGACTCTCAT
CCACTAAGCTCATTACTGGCTTTCCAAAGGATATTTTCCGAGTCTCAATT
CAGAGAGCTTTGTTTACCATTGCACCAAGTTCCTGCCTTTTGTTGTGCAG
GTTCTGAAGCGCCCAGTGAGGCTGTGAGGGCTGCTACTACGATTTCACCA
CCAGGAAAGGAACGCAAGGCACCTGCTCTCCAGATCCCGTCCGCCCGGAT
GATGTCCCCATCGCTGCGTGCTCACCTGTGCGGCATCCCGGTGGTGTGTG
CCGTGGTGTGCTCGCTGGACAGCTCGCAGAGCTTTAGGTACCAGTTCATC
TCCACCTCCCGCAGCAGGGCCAGCTGCCTTGCCCTGAGCTGGCTTTGCCC
GGTTGGGCTGAGGCTGCTGTCTTTGGCATTCTCGGGGGCTTTCTTGGGAG
ATCTGTCTTTCCCCCCTGAAGAAAGGCCAGACTGCTTTCTGAACTTGCTG
TTGTCTTCGGAGATCTGACTCCCTGCAGCGCCTGTGCGGGCTGCCAGCAT
CCTGGAAGTTCCTATCTGCCTGTCTGGGAAGAGGCTAAGCGACTGTCATT
AAAGTAATTTGAATTGATTTCTGTTTCTGTCTCCCTCCGCTGCCCTGTCT
TCCCGCCCCCCCCC

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAATAACTCACTTAAAGAAATACAGAA
CACTGCTAAAGAGTTACAAGTCCTTAAAGAAAAACAGGAAAACAGTGCTA
AAGAGTTACAAGTCCTTAAAGAAAAACAGGAAAACACAACCAAACAGGTA
GAAGTCCTTATAGAAAAACAGGAAAACACATCCAAACAGGTGATAGAAAT
GAACAAAACCATACTAGACCTAAAAAGGGAAGTAGACACAATAAAGAAAA
CCCAAAGTGAGGCGACGCTGGAGATAGAAACCCTAGGAAAGAAATCTGGA
ACCATAGATGCCAGCATCAGCAACAGAATACAAGAGATGGAAGAGAGAAT
CTCAGGTGCAGAAGACTCCATAGAGAACATCGGCACAACAATCAAAGAAA
ATGGAAAATGCAAAAAGATCCTAACTCAAAACATCCAGGAAATCCAGGAC
ACAATGAGAAGACCAAACCTACGGATAATAGGAGTGGATGAGAATGAAGA
TTTTCAACTCAAAGGACCAGCAAACATCTTCAACAAAATTATTGAAGAAA
ACTTCCCAAATCTAAAGAAAGAGATGCCCATGAACATACAAGAAGCCTAC
AGAACTCCAAATAGACTGGACCAGAAAAGAAATTCCTCCCGACACATAAT
AATCAGAACACCAAATGCA

Query= MSMg01no208_b21.b1 MSMg01no208_b21.b1 CHROMAT_FILE:
MSMg01no208_b21.b1 PHD_FILE: MSMg01no208_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:31:49 2005
         (669 letters)



>mm_chr3_64752866_64753935
          Length = 1070

 Score = 1251 bits (647), Expect = 0.0
 Identities = 659/663 (99%), Gaps = 1/663 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctaagatattttttattccctagaggaaaaaaaaa-tgactctcatccactaag 63
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 867 gaattcctaagatattttttattccctagaggaaaaaaaaattgactctcatccactaag 808

                                                                       
Query: 64  ctcattactggctttccaaaggatattttccgagtctcaattcagagagctttgtttacc 123
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 807 ctcattactggctttccaaaggatattttccgagtctcaattcagagagctttgtttatc 748

                                                                       
Query: 124 attgcaccaagttcctgccttttgttgtgcaggttctgaagcgcccagtgaggctgtgag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 attgcaccaagttcctgccttttgttgtgcaggttctgaagcgcccagtgaggctgtgag 688

                                                                       
Query: 184 ggctgctactacgatttcaccaccaggaaaggaacgcaaggcacctgctctccagatccc 243
           ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ggctgctactacgatttcactgccaggaaaggaacgcaaggcacctgctctccagatccc 628

                                                                       
Query: 244 gtccgcccggatgatgtccccatcgctgcgtgctcacctgtgcggcatcccggtggtgtg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gtccgcccggatgatgtccccatcgctgcgtgctcacctgtgcggcatcccggtggtgtg 568

                                                                       
Query: 304 tgccgtggtgtgctcgctggacagctcgcagagctttaggtaccagttcatctccacctc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tgccgtggtgtgctcgctggacagctcgcagagctttaggtaccagttcatctccacctc 508

                                                                       
Query: 364 ccgcagcagggccagctgccttgccctgagctggctttgcccggttgggctgaggctgct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ccgcagcagggccagctgccttgccctgagctggctttgcccggttgggctgaggctgct 448

                                                                       
Query: 424 gtctttggcattctcgggggctttcttgggagatctgtctttcccccctgaagaaaggcc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gtctttggcattctcgggggctttcttgggagatctgtctttcccccctgaagaaaggcc 388

                                                                       
Query: 484 agactgctttctgaacttgctgttgtcttcggagatctgactccctgcagcgcctgtgcg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 agactgctttctgaacttgctgttgtcttcggagatctgactccctgcagcgcctgtgcg 328

                                                                       
Query: 544 ggctgccagcatcctggaagttcctatctgcctgtctgggaagaggctaagcgactgtca 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ggctgccagcatcctggaagttcctatctgcctgtctgggaagaggctaagcgactgtca 268

                                                                       
Query: 604 ttaaagtaatttgaattgatttctgtttctgtctccctccgctgccctgtcttcccgccc 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ttaaagtaatttgaattgatttctgtttctgtctccctccgctgccctgtcttcccgccc 208

              
Query: 664 ccc 666
           |||
Sbjct: 207 ccc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1070
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1060
Effective search space:   698540
Effective search space used:   698540
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)