Query= MSMg01no208_d21.b1 MSMg01no208_d21.b1 CHROMAT_FILE:
MSMg01no208_d21.b1 PHD_FILE: MSMg01no208_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:00 2005
(318 letters)
>mm_chr3_46578380_46579097
Length = 718
Score = 572 bits (296), Expect = e-168
Identities = 311/322 (96%), Gaps = 10/322 (3%)
Strand = Plus / Minus
Query: 5 gaattcctccctgaaatagcacagatactgaattccaatggaacaacacctgttccaacc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gaattcctccctgaaatagcacagatactgaattccaatggaacaacacctgttccaacc 378
Query: 65 ccagggcaggcttttggcttttgggcagtaatcctcttggataacaaatcattcaagtct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ccagggcaggcttttggcttttgggcagtaatcctcttggataacaaatcattcaagtct 318
Query: 125 gctaaataattagtgaatcaagtttcctcactgatttccattcctcttggcaaagctaac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gctaaataattagtgaatcaagtttcctcactgatttccattcctcttggcaaagctaac 258
Query: 185 tctcctccaatttgtatcagctcatgaaaaagaattctacagagtatatata-------- 236
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tctcctccaatttgtatcagctcatgaaaaagaattctacagagtatatatatgtgtgtg 198
Query: 237 --tatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatacagcttttgatttaattctgta 294
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatacagcttttgatttaattctgta 138
Query: 295 ctatatcattccaaactttgaa 316
||||||||||||||||||||||
Sbjct: 137 ctatatcattccaaactttgaa 116
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space: 219081
Effective search space used: 219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no208_d21.g1 MSMg01no208_d21.g1 CHROMAT_FILE:
MSMg01no208_d21.g1 PHD_FILE: MSMg01no208_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:00 2005
(644 letters)
>mm_chr3_46530018_46531061
Length = 1044
Score = 1236 bits (639), Expect = 0.0
Identities = 642/643 (99%)
Strand = Plus / Plus
Query: 1 catgaattcttatcataaattctgggggaaaagttatatttcatacaaaacttcctgttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgaattcttatcataaattctgggggaaaagttatatttcatacaaaacttcctgttc 260
Query: 61 ttacttaagtgataaatttaataattcctgaaaatcatattccatatattatcatcttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttacttaagtgataaatttaataattcctgaaaatcatattccatatattatcatcttct 320
Query: 121 aagttctgtttttcccgtctttggaaaacatgctcagtatttctgttttgcaccacgaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagttctgtttttcccgtctttggaaaacatgctcagtatttctgttttgcaccacgaat 380
Query: 181 ccttgtatttttttgttcagtttctgtttcacatattttacattaatctctgagattcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccttgtatttttttgttcagtttctgtttcacatattttacattaatctctgagattcaa 440
Query: 241 agaggcaaagaaacatctcttttgcataaactatgctggcacctggtatgatgctgagaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaggcaaagaaacatctcttttgcataaactatgctggcacctggtatgatgctgagaa 500
Query: 301 tataataatcagtaagtttgttgagtgaatgaactgatgacagactgaaatgatattcca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tataataatcagtaagtttgttgagtgaatgaactgatgacagactgaaatgatattcca 560
Query: 361 gtacatatactgcttatttttaataacctattacatatttatacttaagtgtgtgctttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtacatatactgcttatttttaataacctattacatatttatacttaagtgtgtgctttg 620
Query: 421 aatgaaaggatttccatttctactttcttctatcacacatagtagattatagccaatctc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aatgaaaggatttccatttctactttcttctatcacacatagtagattatagccaatctc 680
Query: 481 agaattatatgtaactagagttagttcttcctgcctatggcttttgttctacagtgtaac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaattatatgtaactagagttagttcttcctgcctatggcttttgttctacagtgtaac 740
Query: 541 ctccaccaccctctgacgaagtatcagtgactcctcctcgaatatatatataaaacctgg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctccaccaccctctgacgaagtatcagtgactcctcctcgaatatatatataaaacctgg 800
Query: 601 ctgatgattttctatttgtactataatcatattttatatttat 643
||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 801 ctgatgattttctatttgtactataatcatattgtatatttat 843
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space: 655556
Effective search space used: 655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
