BAC Information

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BAC

Clone NameMSMg01-208G06
Chromosome3 (Build37)
Map Location 140,185,209 - 140,329,477
singlet/doubletdoublet
Overlap genenone
Upstream geneB930007M17Rik, LOC100039840, LOC229883
Downstream geneLOC621343, 4930590L14Rik, Pdha2, Unc5c, LOC100039923
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-208G06.T7 (MSMg01no208_g06.b1)MSMg01-208G06.TJ (MSMg01no208_g06.g1)
ACCAG391294AG391295
length718727
length of high quality
(start - end)
310 (46 - 355)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no208_g06.b1 PHD_FILE: MSMg01no208_g06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:32:11 2005CHROMAT_FILE: MSMg01no208_g06.g1 PHD_FILE: MSMg01no208_g06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:32:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,329,172 - 140,329,477)(140,185,209 - 140,185,490)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGGTAGTTTCACGGGTTGCAAGGAAGACTATTTTTCTAAAACAGA
AAATGTAAAGCATTATTCAGTCATGGATTTCCAATGCAGTATTACCTGAA
ACAGCGATTTTTAAAGACTTAGTTTTATGTACTCATGAATTTTAAAAAAT
ATAATAATTTATATAAATGAAACATTTATAGAATGGGACATGTTTCCATT
GGTTTCTACTTTATTTTATTTTAATTAGTACATAAAGAAATCAACAAACA
AAATAGGAATATGTGTCATATTTCTAATTAATCAGTATACTACTTACTAA
AAGGCCTTTAATANTTTTACCCTTGCTTNCCACTTTATTAATGTAAAGAT
AAATATTTTAAACACCCCCCCCCAGAAAAATTTCTCTATGTTAGGCACTA
TATATAGTTATATTGATCTTTGCCACTTAATGTCTATAGAACATTTCTGA
ATGTACATGTCATACTTTGGTGATTTTTAAAACTTTTGTTTTTTCTTATA
ATTTATTTATTGAAAATTTCATACACTGTATTTTTATAATATTCTTCCCT
AACTTCAAATCCCTCCTAGATACTCCCACTTCCTTATCAAATGAACATCC
TATTTTTATCTTACAACACTAACACTAAAAAGCTAATCTTATTAAAAAGT
CCTGAATTCCTTTTGCGN
TCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGGCTAAAGACCATTGCCCTGAG
TCACAGGCTCTATTAGCTGGAACAGAAGTCAGATAGACTGGATCTTCATG
TCTAAATCAGCTACTCTATTCACAGGAGGTCCTAGTGTTCTTAGCAGTTG
TGAAGGTAGTTACTTATATAAATGAAGATTATCGTTTGTCTGTGAGAAGA
GGTCATGAGAGGATCTTACTCAGCTGGCATCTTATTCTAGTTCTCAAAAT
ATCTATAAACTAATATGTTCTTAAAAACCATGGGTCAAAACAAATGGGAG
GATTTGAATTTTTTTTTTCTCCCGCCCCCCCTATTAGGAATGTGAGATGC
GTGAAGTATTTATGACCCCCCCCCAGACACTTTCTTTAATAGGTTGAGGC
TACTCTGGGATATTGTCCTCCCACTCCTACATATTTATTCAATAATCTTA
AGGCATTTTGCCTATAAAATGAACTTTTCTTTTCTAGTATCCAATATCTG
AACAATATTCATGCCCCTCAAAAGATAATTTGCAAATCATCATTTGATAT
ATTCACATTAGGGAACGTTTCCTAGAATGATTTAACGGGGCCTCTGAATG
CCTGTTTCTCCCTTATTGAATTCCCTTTTCCTATTACCTTTTTTCCACTC
ACCCAACTCTTCGTTTCAGTTTCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no208_g06.b1 MSMg01no208_g06.b1 CHROMAT_FILE:
MSMg01no208_g06.b1 PHD_FILE: MSMg01no208_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:11 2005
         (310 letters)



>mm_chr3_140328799_140329508
          Length = 710

 Score =  584 bits (302), Expect = e-171
 Identities = 305/306 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaggtagtttcacgggttgcaaggaagactatttttctaaaacagaaaatgtaaa 64
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 679 gaattcaggtagtttcacgggttgcaaggaggactatttttctaaaacagaaaatgtaaa 620

                                                                       
Query: 65  gcattattcagtcatggatttccaatgcagtattacctgaaacagcgatttttaaagact 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gcattattcagtcatggatttccaatgcagtattacctgaaacagcgatttttaaagact 560

                                                                       
Query: 125 tagttttatgtactcatgaattttaaaaaatataataatttatataaatgaaacatttat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tagttttatgtactcatgaattttaaaaaatataataatttatataaatgaaacatttat 500

                                                                       
Query: 185 agaatgggacatgtttccattggtttctactttattttattttaattagtacataaagaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 agaatgggacatgtttccattggtttctactttattttattttaattagtacataaagaa 440

                                                                       
Query: 245 atcaacaaacaaaataggaatatgtgtcatatttctaattaatcagtatactacttacta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 atcaacaaacaaaataggaatatgtgtcatatttctaattaatcagtatactacttacta 380

                 
Query: 305 aaaggc 310
           ||||||
Sbjct: 379 aaaggc 374


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no208_g06.g1 MSMg01no208_g06.g1 CHROMAT_FILE:
MSMg01no208_g06.g1 PHD_FILE: MSMg01no208_g06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:11 2005
         (286 letters)



>mm_chr3_140185009_140185694
          Length = 686

 Score =  522 bits (270), Expect = e-153
 Identities = 279/282 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggctaaagaccattgccctgagtcacaggctctattagctggaacagaagtcagatag 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 atggctaaagaccattgccctgagtcacaggctctattggctggaacagaagtcagatag 260

                                                                       
Query: 61  actggatcttcatgtctaaatcagctactctattcacaggaggtcctagtgttcttagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actggatcttcatgtctaaatcagctactctattcacaggaggtcctagtgttcttagca 320

                                                                       
Query: 121 gttgtgaaggtagttacttatataaatgaagattatcgtttgtctgtgagaagaggtcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttgtgaaggtagttacttatataaatgaagattatcgtttgtctgtgagaagaggtcat 380

                                                                       
Query: 181 gagaggatcttactcagctggcatcttattctagttctcaaaatatctataaactaatat 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagaggatcttactcaggtggcatcttattctagttctcaaaatatctataaactaatat 440

                                                     
Query: 241 gttcttaaaaaccatgggtcaaaacaaatgggaggatttgaa 282
           |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttcataaaaaccatgggtcaaaacaaatgggaggatttgaa 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)