Query= MSMg01no208_m08.b1 MSMg01no208_m08.b1 CHROMAT_FILE:
MSMg01no208_m08.b1 PHD_FILE: MSMg01no208_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:42 2005
(308 letters)
>mm_chr3_128024012_128024720
Length = 709
Score = 576 bits (298), Expect = e-169
Identities = 304/306 (99%), Gaps = 1/306 (0%)
Strand = Plus / Plus
Query: 4 ggaattcactcctcttctctgcctcccactatgttcaatggcctctctatggcctcatgg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactcctcttctctgcctcccactatgttcaatggcctctctatggcctcatgg 263
Query: 64 ctagtttttcttctcaaagaacacaagtccgagtcagagggactcaagttcaaatctttt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctagtttttcttctcaaagaacacaagtccgagtcagagggactcaagttcaaatctttt 323
Query: 124 cagtgccttggcttcacaaggtttcaaacactgggcttgacacctgggcgattgacagtc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cagtgccttggcttcacaaggtttcaaacactgggcttgacacctgggcgattgacagtc 383
Query: 184 agtgatgattattctcatttctcttttttt-ctttttggttttatttattgtctagtatc 242
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 384 agtgatgattattcttatttctcttttttttctttttggttttatttattgtctagtatc 443
Query: 243 cagtaccaagtaaatagtaaattccccccacttctgtgttgttaaattgaaaaggaactt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cagtaccaagtaaatagtaaattccccccacttctgtgttgttaaattgaaaaggaactt 503
Query: 303 cataga 308
||||||
Sbjct: 504 cataga 509
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 709
Length adjustment: 9
Effective length of query: 299
Effective length of database: 700
Effective search space: 209300
Effective search space used: 209300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no208_m08.g1 MSMg01no208_m08.g1 CHROMAT_FILE:
MSMg01no208_m08.g1 PHD_FILE: MSMg01no208_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:42 2005
(283 letters)
>mm_chr3_128056789_128057472
Length = 684
Score = 516 bits (267), Expect = e-151
Identities = 279/283 (98%), Gaps = 1/283 (0%)
Strand = Plus / Minus
Query: 1 aagatggtggtacctgggatatttatacccttgaaaatggattacaacatgactgacaac 60
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 483 aagatggtggtacctgggatatttatatccttgaaaatggattacaacataactgacaac 424
Query: 61 acattatacctgctacaatacaatatca-ttatcaatcatcttttccctcaattaggatg 119
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 423 acattatacctgctacaatacaatatcacttatcaatcatcttttccctcaattaggatg 364
Query: 120 accgttctagtgacaatcgcacaaagacacagagcaagtggatatttcaggttaggtaag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 accgttctagtgacaatcgcacaaagacacagagcaagtggatatttcaggttaggtaag 304
Query: 180 ttcttgtaaagttcactgattccaagatgccaaagtagataccaagtaaatctctatgat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ttcttgtaaagttcactgattccaagatgccaaagtagataccaagtaaatctctatgat 244
Query: 240 attttgataggtctcaagtacactgcaaatgcttatggcacca 282
||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 243 attttaataggtctcaagtacactgcaaatgcttatggcacca 201
Score = 95.5 bits (49), Expect = 3e-24
Identities = 49/49 (100%)
Strand = Plus / Plus
Query: 145 gacacagagcaagtggatatttcaggttaggtaagttcttgtaaagttc 193
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 gacacagagcaagtggatatttcaggttaggtaagttcttgtaaagttc 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 283
Length of database: 684
Length adjustment: 9
Effective length of query: 274
Effective length of database: 675
Effective search space: 184950
Effective search space used: 184950
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
