Query= MSMg01no208_n09.b1 MSMg01no208_n09.b1 CHROMAT_FILE:
MSMg01no208_n09.b1 PHD_FILE: MSMg01no208_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:46 2005
(657 letters)
>mm_chr3_10303539_10304595
Length = 1057
Score = 1135 bits (587), Expect = 0.0
Identities = 612/627 (97%), Gaps = 12/627 (1%)
Strand = Plus / Plus
Query: 4 ggaattctcaaaggctggatgattgcagcaccatggaagggagagtacattttccctcat 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcaaaggctggatgattgcagcaccatggaagggagagtacattttccctcat 263
Query: 64 agaagtgtattaaaacctgagggctacacaatgaagcacccacaattagtgcctttcgtg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agaagtgtattaaaacctgagggctacacaatgaagcacccacaattagtgcctttcgtg 323
Query: 124 gaactagtggccaggggatgaacaataatacaggattaaggtgaaaaggtctgtggccta 183
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 324 gaactagtggccaggggatgaacaataataccggattaaggtgaaaaggtctgtggccta 383
Query: 184 agaaaggacacaaaacaggacacaaaacagggcacatctcttcccaaacatttaaacctc 243
|||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agaaag-----------gg-cacaaaacagggcacatctcttcccaaacatttaaacctc 431
Query: 244 tatttctgaaagcattctaggtgcttcatgtacaattagcacagtgaagagaaataggga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 tatttctgaaagcattctaggtgcttcatgtacaattagcacagtgaagagaaataggga 491
Query: 304 aatacaatccccctaccactgctataggtcttgggggttagtgctttgagacagaatctt 363
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 492 aatacaatccccctaccactgctataggtcttgggggttagtgttttgagacagaatctt 551
Query: 364 gacctatgactcagaccagcctagaattttctatgtaacccaggctgcctgtgaactcaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gacctatgactcagaccagcctagaattttctatgtaacccaggctgcctgtgaactcaa 611
Query: 424 gctattcctacctcagactcctgaaggctagaattacaggggtttgacaccatgtccagt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gctattcctacctcagactcctgaaggctagaattacaggggtttgacaccatgtccagt 671
Query: 484 cagtaccgttgtccttctatgggaaatttaaaaataattaataaataagtagtctattca 543
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 cagtaacgttgtccttctatgggaaatttaaaaataattaataaataagtagtctattca 731
Query: 544 tccacatgtccaatcgccttctccctgcaaggcagcaagagctgcaagcacaccacacac 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 tccacatgtccaatcgccttctccctgcaaggcagcaagagctgcaagcacaccacacac 791
Query: 604 acacacacacacacacacacacacaca 630
|||||||||||||||||||||||||||
Sbjct: 792 acacacacacacacacacacacacaca 818
Score = 70.3 bits (36), Expect = 5e-16
Identities = 39/40 (97%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 592 cacac-cacacacacacacacacacacacacacacacaca 630
||||| ||||||||||||||||||||||||||||||||||
Sbjct: 103 cacacacacacacacacacacacacacacacacacacaca 142
Score = 70.3 bits (36), Expect = 5e-16
Identities = 39/40 (97%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 592 cacac-cacacacacacacacacacacacacacacacaca 630
||||| ||||||||||||||||||||||||||||||||||
Sbjct: 105 cacacacacacacacacacacacacacacacacacacaca 144
Score = 70.3 bits (36), Expect = 5e-16
Identities = 39/40 (97%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 592 cacac-cacacacacacacacacacacacacacacacaca 630
||||| ||||||||||||||||||||||||||||||||||
Sbjct: 107 cacacacacacacacacacacacacacacacacacacaca 146
Score = 70.3 bits (36), Expect = 5e-16
Identities = 39/40 (97%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 592 cacac-cacacacacacacacacacacacacacacacaca 630
||||| ||||||||||||||||||||||||||||||||||
Sbjct: 109 cacacacacacacacacacacacacacacacacacacaca 148
Score = 70.3 bits (36), Expect = 5e-16
Identities = 39/40 (97%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 592 cacac-cacacacacacacacacacacacacacacacaca 630
||||| ||||||||||||||||||||||||||||||||||
Sbjct: 111 cacacacacacacacacacacacacacacacacacacaca 150
Score = 68.4 bits (35), Expect = 2e-15
Identities = 38/39 (97%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 593 acac-cacacacacacacacacacacacacacacacaca 630
|||| ||||||||||||||||||||||||||||||||||
Sbjct: 102 acacacacacacacacacacacacacacacacacacaca 140
Score = 68.4 bits (35), Expect = 2e-15
Identities = 38/39 (97%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 592 cacac-cacacacacacacacacacacacacacacacac 629
||||| |||||||||||||||||||||||||||||||||
Sbjct: 113 cacacacacacacacacacacacacacacacacacacac 151
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 85
Number of extensions: 29
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 11
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
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