Query= MSMg01no209_a19.b1 MSMg01no209_a19.b1 CHROMAT_FILE:
MSMg01no209_a19.b1 PHD_FILE: MSMg01no209_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:03 2005
(315 letters)
>mm_chr3_104459495_104460209
Length = 715
Score = 584 bits (302), Expect = e-171
Identities = 308/310 (99%)
Strand = Plus / Minus
Query: 5 gaattcagcagaatggttttaaaagttaaggctctctaaagagttctaaaaactaaaact 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gaattcagcagaatggttttaaaagttaaggctctctaaagagttctaaaaactaaaact 455
Query: 65 taaggcacatattataatcttcatgacactgttaaaagctaagattaaaacaaaataaac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 454 taaggcacatattataatcttcatgacactgttaaaagctaagattaaaacaaaacaaac 395
Query: 125 aaacaaaaagaaaatcactacttctttcccatatcctttgccaaccactccctacctaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 aaacaaaaagaaaatcactacttctttcccatatcctttgccaaccactccctacctaaa 335
Query: 185 gcatagtatattttaaattcaggcattggtaaggagtgaaaaaaaaaatcccaccaatga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gcatagtatattttaaattcaggcattggtaaggagtgaaaaaaaaaatcccaccaatga 275
Query: 245 acacccggtaggttttccacacaaatgtccactgtctgcactgagcaccactggtaggct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 274 acacccggtaggttttccacacaaatgtccactgtctgcactgagcaccactggtagact 215
Query: 305 agaggccagc 314
||||||||||
Sbjct: 214 agaggccagc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space: 216036
Effective search space used: 216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no209_a19.g1 MSMg01no209_a19.g1 CHROMAT_FILE:
MSMg01no209_a19.g1 PHD_FILE: MSMg01no209_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:03 2005
(261 letters)
>mm_chr3_104346199_104346859
Length = 661
Score = 387 bits (200), Expect = e-112
Identities = 234/258 (90%), Gaps = 20/258 (7%)
Strand = Plus / Plus
Query: 1 cttctgtttactgctgagagataaaagacagaaaagtattatggcctccatatttccccc 60
||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 201 cttctgtttactgctgagagataaaagacagaaaagtattatggcctacatattaacccc 260
Query: 61 catgtgatactgttaagagggagtacctcccaaaaagggtaagccaggccagcaccaatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgtgatactgttaagagggagtacctcccaaaaagggtaagccaggccagcaccaatg 320
Query: 121 cctccagcccagaactagaatgccaggccagcaaggagtcctcagctagacatattctca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctccagcccagaactagaatgccaggccagcaaggagtcctcagctagacatattctca 380
Query: 181 aagtggtggtggtgtctctctctctctctctctctctctctctctctgtgtgtgtgtgtg 240
||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 381 aagtggtggtggtgtgtctctctctct--------------------gtgtgtgtgtgtg 420
Query: 241 tgtgtgtgtgtgtgtgtg 258
||||||||||||||||||
Sbjct: 421 tgtgtgtgtgtgtgtgtg 438
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 661
Length adjustment: 9
Effective length of query: 252
Effective length of database: 652
Effective search space: 164304
Effective search space used: 164304
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
