CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGGATTCTCTAAGAGTCTTTCTGACATTTCATAAGACAAGAAAC
TGTACTCAATCTGCTTATTCATTATTCTTCTCAAGTATGAAACGAGAAGT
TGGAAGTCATTAGTTCAGGTAGGTATTTTTGATGATTATTGGTCTTCTAG
AATCATAGTTGCTTACATTCAGACCACTGAGAAACTAGAAAATTTCTGCT
ATTCTGAAGAATTCACATAACTGTCCTCGTCATTTAGGGATGATCTACTA
TGTGAGTCATTGCAGTCTGCATTCCAAAGAGACATAAGAATTAGGACAAT
TACACTTANATAGTTCACTGCCNNCCAACCCCGAGTCAATGATTTTTAGC
AAATCATTCTAAGAGCCATTCTATGAAATAAGATATAGATAGAAGATAGA
ATAATAATACTTTCCTTCACTTTTTGGAACATGGATTTGAAACAAAGAAC
TGGACCATTCCAAGAATAAGAAGAGAATCAGAAAGATAAACACCAGTGCC
TTTCACAGTTAAACTACACGTGGAAGTCCGTGTGTGTCTGTGCATCATTG
TCCCCTGTCAGACATGCAAAACTGCTGTACATTTCAACATTTCCTAATTT
TATCACATGAATTATTTCTAAGGAATGATGACTTCAGTGAAACAAAGCAT
AAAAGAGAATATAAGAAAAACCCTCATT

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTATGTGATTTCATTAATGTTTA
CTATAAAATAGGGTCTTCATTCATAAGCTGAGAACAGTGAACCAGGGATA
TAGGTAATACAGAGGTATATTGGGAAGAACTGATAAGATAATGAATAGGG
CTATAAAAACATGAGAAAGCAAGGATTGGAGAAATAGAAATCATTGCCAT
GTATATAATGTTGACATTAATCTCATTAATCTGAAATGAGACTTATCTCA
GGGATTAGATAATAGTAGCTATTGGGTTAATAACGGGGATTAGCGTTTAC
AGACAGCCTTTTCTTTTACGCCCCCCTCCCCCCAGCTGACCAAAGCAGAC
TTCACATGTCTAGGTATCACCGCAAAATGATTTCTGGAGGAGGATGTGGT
GAGGTACAGTCCTACTGCAGCCTATGGAGCCATTATTACCATTTGCATAC
AATGGAGTTGATGCATGATGGTGTCATAAAACCACATCATTCTATCTAGT
GCTCTGTATATTGTGCAGTTTTACACACGTACTCAAATTCTTAAAATCTA
AATCCATGTAGAAATTATTCTTACATCATTTGTGTTTTAAATATATTTAT
GTCAGACAATGTTCTTGTGTCAATAATGTTTTCCAAGGTTTTGCTTTATT
CATGATACTTAGAATTGTGTGATGATAA

Query= MSMg01no209_o16.b1 MSMg01no209_o16.b1 CHROMAT_FILE:
MSMg01no209_o16.b1 PHD_FILE: MSMg01no209_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:34:13 2005
         (313 letters)



>mm_chr3_77571207_77571919
          Length = 713

 Score =  567 bits (293), Expect = e-166
 Identities = 302/305 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctggattctctaagagtctttctgacatttcataagacaagaaactgtactcaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctggattctctaagagtctttctgacatttcataagacaagaaactgtactcaa 264

                                                                       
Query: 65  tctgcttattcattattcttctcaagtatgaaacgagaagttggaagtcattagttcagg 124
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctgcttactcattattcttctcaagtatgaaacgagaagttggaagtcattagttcagg 324

                                                                       
Query: 125 taggtatttttgatgattattggtcttctagaatcatagttgcttacattcagaccactg 184
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taggtacctttgatgattattggtcttctagaatcatagttgcttacattcagaccactg 384

                                                                       
Query: 185 agaaactagaaaatttctgctattctgaagaattcacataactgtcctcgtcatttaggg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agaaactagaaaatttctgctattctgaagaattcacataactgtcctcgtcatttaggg 444

                                                                       
Query: 245 atgatctactatgtgagtcattgcagtctgcattccaaagagacataagaattaggacaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atgatctactatgtgagtcattgcagtctgcattccaaagagacataagaattaggacaa 504

                
Query: 305 ttaca 309
           |||||
Sbjct: 505 ttaca 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no209_o16.g1 MSMg01no209_o16.g1 CHROMAT_FILE:
MSMg01no209_o16.g1 PHD_FILE: MSMg01no209_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:34:13 2005
         (282 letters)



>mm_chr3_77707663_77708344
          Length = 682

 Score =  538 bits (278), Expect = e-157
 Identities = 281/282 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actatgtgatttcattaatgtttactataaaatagggtcttcattcataagctgagaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 actatgtgatttcattaatgtttactataaaatagggtcttcattcataagctgagaaca 423

                                                                       
Query: 61  gtgaaccagggatataggtaatacagaggtatattgggaagaactgataagataatgaat 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gtgaaacagggatataggtaatacagaggtatattgggaagaactgataagataatgaat 363

                                                                       
Query: 121 agggctataaaaacatgagaaagcaaggattggagaaatagaaatcattgccatgtatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 agggctataaaaacatgagaaagcaaggattggagaaatagaaatcattgccatgtatat 303

                                                                       
Query: 181 aatgttgacattaatctcattaatctgaaatgagacttatctcagggattagataatagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 aatgttgacattaatctcattaatctgaaatgagacttatctcagggattagataatagt 243

                                                     
Query: 241 agctattgggttaataacggggattagcgtttacagacagcc 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 agctattgggttaataacggggattagcgtttacagacagcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)