Query= MSMg01no210_a15.b1 MSMg01no210_a15.b1 CHROMAT_FILE:
MSMg01no210_a15.b1 PHD_FILE: MSMg01no210_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:34:24 2005
(305 letters)
>mm_chr3_12347057_12347761
Length = 705
Score = 569 bits (294), Expect = e-166
Identities = 300/302 (99%), Gaps = 1/302 (0%)
Strand = Plus / Plus
Query: 4 ggaattctgtcttcttgtcatttggtgatgtacattaagaaagccttcatgtatggacat 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgtcttcttgtcatttggtgatgtacattaagaaagccttcatgtatggacat 263
Query: 64 agttttacattcttctactctagtagattttgcctttaaaaaacacttattttatgtcta 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agttttacattcttctactctagtagattttgcctttaaaaaacacttattttatgtcta 323
Query: 124 tatgcctttatttgcccccattccattatctacacctatctagctagtcctttttttctt 183
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 324 tatgcctttatttgcccccattccattatctacacctatctagctagtcttttttttctt 383
Query: 184 tatttaggttctatagttctatagattaaagttgttttatcattaacttaaaatctaata 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tatttaggttctatagttctatagattaaagttgttttatcattaacttaaaatctaata 443
Query: 244 catgcttttacttctctctttgagtcttggttatctcactcagcatacattttttctaga 303
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 444 catgcttttacttctctctttgagtcttggttatctcactcagcatacattttt-ctaga 502
Query: 304 tt 305
||
Sbjct: 503 tt 504
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space: 206016
Effective search space used: 206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no210_a15.g1 MSMg01no210_a15.g1 CHROMAT_FILE:
MSMg01no210_a15.g1 PHD_FILE: MSMg01no210_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:34:25 2005
(287 letters)
>mm_chr3_12497715_12498401
Length = 687
Score = 532 bits (275), Expect = e-155
Identities = 284/287 (98%)
Strand = Plus / Minus
Query: 1 caggccaaagaacttgtctttgaatcatcggacagcatatagttatccaatactatgaaa 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 404 caggccaaagaacttgtctttgaatcatcggacagcgtatagttatccaatactatgaaa 345
Query: 61 tatggtccaatgacttggcttctaactctcctggaataaaagtgcatacataaaagaagt 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 344 tatggtccaatgacttggcttctaactctcctggaataaaagtgcatacagaaaagaagt 285
Query: 121 aagaaagaagttaggcattaagataggaatacctgttgtaatgaatactgtaaacataga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 aagaaagaagttaggcattaagataggaatacctgttgtaatgaatactgtaaacataga 225
Query: 181 agtaggagaggtctgccactaaggaaataaaaatatttaaaaattaatggaagtcaatta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 agtaggagaggtctgccactaaggaaataaaaatatttaaaaattaatggaagtcaatta 165
Query: 241 cttgggcccagtattaagaaaaacaaccaaaacctaatccataacca 287
||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 164 cttgggcccagtattaagaaaaacagccaaaacctaatccataacca 118
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
