BAC Information

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BAC

Clone NameMSMg01-210B16
Chromosome3 (Build37)
Map Location 74,540,062 - 74,540,350
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667425, LOC619764, LOC667434, LOC100041551
Downstream geneEG667459, BC050789, Serpini2, Wdr49, Pdcd10, Serpini1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-210B16.T7 (MSMg01no210_b16.b1)MSMg01-210B16.TJ (MSMg01no210_b16.g1)
ACCAG392361AG392362
length737735
length of high quality
(start - end)		325 (45 - 369)290 (74 - 363)
definitionCHROMAT_FILE: MSMg01no210_b16.b1 PHD_FILE: MSMg01no210_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:30 2005CHROMAT_FILE: MSMg01no210_b16.g1 PHD_FILE: MSMg01no210_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:34:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTCAGCTCTGAGCCCCATTTTTAATGGGGTTATTTGATTTTC
TGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCTAC
ATAACTCTTAAACTGACAAATTTCTCTGACACTGAGAACTAAAAGCACGG
CTACTTTTGGAATACAGTTTCTGTGTGCTGACCTTGAGGAAACACTTTTC
AAAGATTTCACCTTCATGATGCTAGGTTCTTCTTAAGCACTCCAAATCTC
CTAACTCCAGCTATCCACCACCACGTGTGCTAGTAACAGAGGTTTCACTT
TATGTGTGCCTTTCTCTTGTGAACCACCCAAAATCCTTCATTTCGGCTGA
CCAGAACAACAGTCTCCCAACTCAAATAAGCAAGCAGCCCTGATAGAACC
TGTAAACTTCCCTCTAAAAGAAGACAGACCTCCATTTTTTGCACTGCTTT
CAACATCCTTATCTCCCTACCTCCCATAAAGTAGCTCACTGAGTTCTCAA
CACTCAATGTCATTTCTAACCCAAAGTTCCAAAGTCCTTCAACAATTCTC
CCCATACAAGATAACTAGGGAATATAGTAGCTATAGCCTACTAAGCTGTT
GCCAATTTGTCTTAGTTACAGCTACCAAAAAAGAAATTAAATACCATATC
ACAATATTTAAAGTATCCGAACGCTTATAAATTCCTC

TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTGCTGGTAACCTCTTTTTCTTTGTC
TATGAACTTCATTCATCCCTTATCCAGATATTCTTGAGTATTGACTTTGT
TTCAGACATTTTCCAAAATGGAATAGGTTATCTGTAATGAAAAGTACTCT
TGAGAGCTTAGGTAGGAAAAGAAACAACATATAATAAGTAACAAACAAAC
AAAAATGTAAGTATACAATTTAAAAGTGTCGGATGTTACTAAGAACTGAA
TAGGCAGGACAAAGTATAGAACTAAAACGTCTTACTTTTTGTTTTATTAG
ATATTTTCTTTANNATANNTCACANGTCTNNCCTTTCCTGGTTTCCCCTC
TGAAACTCCAAGCAGCCCACTCAAACAAAAAAAAACAGCCAATCGGTGGA
TGAAGCTTGGAATGTTTGTTTTGTTTTGTTTNGNNTNNTTNNTCTTTTTT
TTTCTCCCTTTCTTCTCTCTCCTTTTCTTCTTTTTCTCTCTTTCTTCTTT
TCCTCTTCTTCTTCCTTCCCCCTTTTCTTTTTTCTTTTCCTCTTCTTCCT
CCTTTTTCTCTTTTTCTTCTCTTCCTTCCTATTTCTTTTTTCCAATCTTC
CATCCCTTTCTTTTCTTATCTATTATTTTTTGCTATTTCCATATATCTAT
TTATCCCTATATCCTTACTTTTTAATTAATTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no210_b16.g1 MSMg01no210_b16.g1 CHROMAT_FILE:
MSMg01no210_b16.g1 PHD_FILE: MSMg01no210_b16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:34:30 2005
         (290 letters)



>mm_chr3_74539862_74540551
          Length = 690

 Score =  551 bits (285), Expect = e-161
 Identities = 288/289 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgctggtaacctctttttctttgtctatgaacttcattcatcccttatccagatattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tctgctggtaacctctttttctttgtctatgaacttcattcatcccttatccagatattc 430

                                                                       
Query: 61  ttgagtattgactttgtttcagacattttccaaaatggaataggttatctgtaatgaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ttgagtattgactttgtttcagacattttccaaaatggaataggttatctgtaatgaaaa 370

                                                                       
Query: 121 gtactcttgagagcttaggtaggaaaagaaacaacatataataagtaacaaacaaacaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gtactcttgagagcttaggtaggaaaagaaacaacatataataagtaacaaacaaacaaa 310

                                                                       
Query: 181 aatgtaagtatacaatttaaaagtgtcggatgttactaagaactgaataggcaggacaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 aatgtaagtatacaatttaaaagtgtcggatgttactaagaactgaataggcaggacaaa 250

                                                            
Query: 241 gtatagaactaaaacgtcttactttttgttttattagatattttcttta 289
           ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 249 gtatagaactaaaacgtcttactttttgttttattagatatgttcttta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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